13 projects
phosphograph
Directed, signed, provenance-annotated phospho-signaling graph builder and query CLI.
cellosaurus-mcp
Unofficial MCP server for the SIB Cellosaurus resource.
protocol-mcp
MCP that connects to wetlab protocol resources, including protocols.io
skill-to-mcp
Convert AI Skills (Claude Skills format) to MCP server resources
nucleotide-archive-mcp
MCP server for searching European Nucleotide Archive (ENA) datasets. Find RNA-seq studies, retrieve metadata, and discover related publications to validate research hypotheses.
pytximport
pytximport is Python implementation of `tximport` to transform transcript counts from transcriptome mapping tools into gene count estimations.
spatiomic
A python toolbox for spatial omics analysis.
biocontext_kb
A knowledgebase MCP server for biomedical research, part of the BioContextAI project.
pyclustree
Visualize cluster assignments at different resolutions
clusterkit
A Python package for cluster analysis and visualization.
cellmake
A Python package for single-cell RNA-sequencing data analysis.
antibuddy
A Python package for the analysis of spatially resolved proteomics data.
pathoplex
A Python package for the analysis of spatially resolved proteomics data.
