20 projects
cell-eval
Evaluation metrics for single-cell perturbation predictions
pdex
Parallel differential expression for single-cell perturbation sequencing
numba-mwu
Numba-accelerated Mann-Whitney U test with sparse matrix support.
cell-load
Dataloaders for training models on huge single-cell datasets
pycyto
Python utilities used by cyto
arc-state
State is a machine learning model that predicts cellular perturbation response across diverse contexts.
anntools-bio
A CLI-driven AnnData toolkit
cell-filter
A python implementation of the EmptyDrops algorithm
geomux
A tool to assign identifiers to cell barcodes
screenviz
A tool to visualize the results of 1D CRISPR screens
cell-sets
Add your description here
cell-states
Add your description here
yaflux
A lightweight, declarative framework for python analysis workflows.
idea-bio
Integrated Differential Expression and Annotation
ggetrs
Biological querying and analysis
muxsim
A tool to simulate cell/guide matrices
pvsvg
an implementation of visjs from networkx with export svg
adpbulk
Pseudo-Bulking Single-Cell RNA-seq
adjustpy
None
hgsig
Differential Representation with Hypergeometric Tests
