18 projects
pydra
Pydra dataflow engine
smriprep-docker
A wrapper for generating Docker commands using regular sMRIPrep syntax
smriprep
sMRIPrep (Structural MRI PREProcessing) pipeline
niworkflows
NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain.
fmriprep-docker
A wrapper for generating Docker commands using regular fMRIPrep syntax
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data.
nibabies
NeuroImaging Babies provides processing tools for magnetic resonance images of the brain in infants.
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes.
mriqc
Automated Quality Control and visual reports for Quality Assesment of structural (T1w, T2w) and functional MRI of the brain.
nirodents
NeuroImaging Rodents (NiRodents) provides processing tools for magnetic resonance images of the rodent brain.
templateflow
TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
nitransforms
NiTransforms -- Neuroimaging spatial transforms in Python.
mriqc-learn
Learning on MRIQC-generated image quality metrics (IQMs).
eddymotion
Pure python eddy-current and head-motion correction for dMRI, an extension of QSIprep's SHOREline algorithm (Cieslak, 2020) to multiple diffusion models.
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data.
gridbspline
N-Dimensional, gridded, and multivariate data interpolation using splines
regseg
Python interface to RegSeg, a surface-driven registration method for the structure-informed segmentation of multispectral brain images