36 projects
tdfextractor
Extract MS2, MGF, and mzML files from Bruker timsTOF .d folders
tdfpy
Python package for parsing Bruker timsTOF data with centroiding and noise filtering
spxtacular
Mass spectrometry spectrum processing library.
mzmlpy
A lightweight Python library for parsing mzML mass spectrometry files.
serenipy
Python library for parsing IP2 proteomics file formats (MS2, SQT, DTASelect-filter, Census)
peff-digest
PEFF-aware in-silico protein digestion with PTM enumeration, sequence variants, and ProForma output.
peptacular
A ProForma peptide sequence parser and annotation library
filterframes
A very simple DTASelect-Filter.txt parser.
fastaframes
A very simple fasta file parser.
unimodpy
Python library for parsing and querying the UNIMOD mass spectrometry modifications database.
uniprotptmpy
Python library for parsing and querying the UniProt PTM controlled vocabulary list.
psimodpy
Python library for the PSI-MOD protein modification ontology
manzanita
A high-performance interval tree library implemented in Rust with Python bindings
peff-uniprot-fetcher
Fetch UniProt protein data and generate PEFF (PSI Extended FASTA Format) files.
pefftacular
A pure-Python library for reading and writing PEFF (PSI Extended FASTA Format) files.
paftacular
mzpaf parser
tacular
Includes lookups for modifications, amino acids, and other data types.
msconvert-cli
Python wrapper for ProteoWizard msconvert with Docker support and preset configs
sage-web-apps
Web applications for Sage MS/MS search engine
streamlit-notify
A Streamlit component that provides toast notifications that persist across reruns
cpp-diann
CPP DIANN Streamlit App
sage-peptide-ambiguity-annotator
Annotate peptide spectrum matches (PSMs) from Sage with ambiguity information
streamlit-permalink-pg
Effortless permalinks in Streamlit apps. Synchronize Streamlit Widgets with URL Query Params.
sage-web-app
Web applications for Sage MS/MS search engine
exclusionms
Python package for working with exclusionms-api and exclusionms-streamlit
pepboost
Awesome pepboost created by pgarrett-scripps
cppquant
Simple tool to compare cpp quant results
chaparralapi
An API for the Chaparral platform
casanovogui
A streamlit GUI for the casanovo.
streamlit-themes
A package for customizing themes in Streamlit apps.
quantcompare
Simple tool to compare sage quant results!
msms-compression
A tool for compressing MS/MS data
peptacular-bindings
None
peptide-property-predictor
A very simple peptide property predictor.
ip2mokapot
ranged-kdtree
Basic KdTree with Range Search
