Scans genome contigs against ResFinder, PlasmidFinder, and PointFinder databases
IRIDA uploader: upload NGS data to IRIDA system
Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen geneand cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.
Subtype microbial whole-genome sequencing (WGS) data using SNV targeting k-mer subtyping schemes.
Mash MinHash search your sequences against a NCBI RefSeq genomes database
Exports SISTR results available through IRIDA into a single report.
An Amino Acid Variant Format parser for Python.
Python library that calculates viral drug resistance interpretations/scores based on given algorithm and mutation list files