Converting various input formats into WDL structs for BioWDL pipelines.
Faster zlib and gzip compatible compression and decompression by providing python bindings for the ISA-L library.
Open compressed files transparently
A pytest plugin for configuring workflow/pipeline tests using YAML files
Retrieve a column for each in a set of tables, placing them in a single output table.
Chunk and scatter the regions in a bed or sequence dict file
A pytest plugin for sending a desktop notification and playing a sound upon completion of tests
Creates a permanent cache for singularity images on disk.
Package a WDL and its imports into a zip file.
A tool for pulling singularity images in HPC environments.
Bioinformatics Test Data Generator
Convert SNP array to VCF
Splits FASTQ files evenly.