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Ruben Vorderman

Username    rhpvorderman
Date joined   Joined

16 projects

xopen

Last released

Open compressed files transparently

isal

Last released

Faster zlib and gzip compatible compression and decompression by providing python bindings for the ISA-L library.

dnaio

Last released

Read and write FASTA and FASTQ files efficiently

array-as-vcf

Last released

Convert SNP array to VCF

fastq-filter

Last released

A fast FASTQ filter progam.

pytest-workflow

Last released

A pytest plugin for configuring workflow/pipeline tests using YAML files

gzip-static

Last released

Compress your static website with gzip for faster serving with NGiNX's gzip_static on.

biowdl-input-converter

Last released

Converting various input formats into WDL structs for BioWDL pipelines.

collect-columns

Last released

Retrieve a column for each in a set of tables, placing them in a single output table.

chunked-scatter

Last released

Chunk and scatter the regions in a bed or sequence dict file

pytest-notification

Last released

A pytest plugin for sending a desktop notification and playing a sound upon completion of tests

singularity-permanent-cache

Last released

Creates a permanent cache for singularity images on disk.

wdl-packager

Last released

Package a WDL and its imports into a zip file.

prepull-singularity

Last released

A tool for pulling singularity images in HPC environments.

biotdg

Last released

Bioinformatics Test Data Generator

fastqsplitter

Last released

Splits FASTQ files evenly.

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