9 projects
spearfish
Python bindings for spearfish, a fast long-read RNA-seq mapper to the transcriptome
sshash
Python bindings for the sshash compressed k-mer dictionary
piscem
Python bindings for the piscem k-mer mapping engine
gravlax-client
Dependency-light Python client for the Gravlax aie command-line interface
pyroe
utilities of alevin-fry
biogrouper
Graph-based clustering and annotation for improved de novo transcriptome analysis
fasta_digest
Get the signature of a fasta file
rapclust
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
grass
Annotation of de novo assemblies using semi-supervised learning on graphs
