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  Joined on Feb 2, 2015

12 Projects


Last released on Feb 19, 2018

Script to manipulate FASTA and FASTQ files, plus API for developers


Last released on Feb 2, 2018

ARIBA: Antibiotic Resistance Identification By Assembly


Last released on Jan 31, 2018

circlator: a tool to circularise genome assemblies


Last released on Jan 25, 2018

Iterative Virus Assembler


Last released on Nov 21, 2017

SEROBA: Serotyping for illumina reads


Last released on Aug 21, 2017

Wrapper for MUMmer


Last released on Aug 11, 2017

Package to run farm jobs - currently LSF supported


Last released on Apr 19, 2016

Assembly refinement tools, mostly useful for (but not limited to) pacbio bacterial assemblies


Last released on Mar 28, 2015

Deprecated: please use json2email instead


Last released on Mar 28, 2015

Takes a jinja2 template and some json and sends an email


Last released on Mar 26, 2015

Tools for working with the pathogen pipeline at The Wellcome Trust Sanger Institute


Last released on Feb 2, 2015

Package to run blast in parallel on a compute farm

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