15 projects
xenosite-forest
Metabolic Forest: enumerate metabolite structures from reaction rules
xenosite-predict
RDKit public API + internal OpenBabel 2.4 + ONNX predictors for XenoSite (xenosite.predict)
anytensor
Portable tensor ops across NumPy, JAX, PyTorch, and TensorFlow, with segment/GNN primitives.
openbabel
Python interface to the Open Babel chemistry library
hydra-once
A simple library for use with Hydra or OmegaConf configuration, enabling singleton instantiation of config subtrees.
xenopict
A Python library for drawing chemical structures
elk-python
Python wrapper for Eclipse Layout Kernel (ELK) server
tiffslide-xarray
Xarray extension that uses xarray to lazy read 2D Tiff files.
wsiml
Project to support machine learning on whole slide images. Currently a placeholder in pre-alpha.
xenosite-fragment
Library for molecule fragment operations.
xenosite
CROC
A package for calculating ROC curves and Concentrated ROC (CROC) curves.
PlotDot
Utility for plotting perceputally uniform dots.
PyScons
An extension to Scons which enables dependency tracking on python script imports.
ConfArgParse
An integrated argument/configuration file parser that follows the syntax of argparser
