5 projects
Cell-GPS
Cell-GPS spatial topology analysis for spatial omics data.
pyXenium
Xenium I/O, multimodal analysis, topology workflows, contour-native spatial profiling, GMI inference, mechanostress analysis, and optional external workflow bridges.
spatho
Public-facing AI-driven spatial pathologist wrapper package for Xenium workflows.
histoseg
Python toolkit for H&E image analysis, spatial contour analysis, and 3D contour reconstruction.
SpatialPerturb
AnnData-native framework for spatial perturbation inference across sequencing-based and imaging-based platforms.
