15 projects
piper
A lightweight python toolkit for gluing together restartable, robust command line pipelines
logmuse
Logging setup
ubiquerg
Various utility functions
yacman
A standardized configuration object for reference genome assemblies
fawltydeps
Find undeclared and unused 3rd-party dependencies in your Python project.
peppy
A python-based project metadata manager for portable encapsulated projects
lucidoc
API documentation in Markdown
veracitools
Testing utilities
attmap
Multiple access patterns for key-value reference
refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file
refgenconf
A standardized configuration object for reference genome assemblies
divvy
A python-based configuration manager for portable environment configurations
loopercli
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
pararead
Parallel processing of sequencing reads
ngstk
Next-generation sequencing utility functions
