14 projects
yacman
A standardized configuration object for reference genome assemblies
peppy
A python-based project metadata manager for portable encapsulated projects
piper
A lightweight python toolkit for gluing together restartable, robust command line pipelines
fawltydeps
Find undeclared and unused 3rd-party dependencies in your Python project.
ubiquerg
Various utility functions
pararead
Parallel processing of sequencing reads
logmuse
Logging setup
lucidoc
API documentation in Markdown
attmap
Multiple access patterns for key-value reference
refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file
refgenconf
A standardized configuration object for reference genome assemblies
ngstk
Next-generation sequencing utility functions
