11 projects
pycelladmix
Python port of cellAdmix — evaluating and correcting cell admixtures in imaging-based spatial transcriptomics data
py-TranspaceR
Statistical analysis of Spatial transcriptomic data (Python port of TranspaceR)
py-CellCall
Python port of cellcall: inference of intercellular networks from single-cell transcriptomics
py-spacetrooper
Quality Control for image-based spatial transcriptomics data — Python port of SpaceTrooper
pystatial
A pure-Python re-implementation of Bioconductor Statial for spatial cell state analysis
py-sigxtalk
Python rewrite of SigXTalk: Dissecting crosstalk induced by cell-cell communication
py-spanorm
Spatially-aware normalisation for spatial transcriptomics data (Python port of SpaNorm)
py-spotsweeper
Spatially-aware quality control for spatial transcriptomics
pyaugur
Python port of Augur: cell type prioritization in high-dimensional single-cell data
py-hdwgcna
Pure-Python hdWGCNA — weighted gene co-expression network analysis for single-cell data, AnnData-native.
py-scmetabolism
Python reimplementation of scMetabolism for single-cell metabolism analysis
