5 projects
xengsort
xenograft sorting of FASTQ reads into five categories: host, graft, both, neither, ambiguous.
panxpress
Gene expression quantification with a pan-transcriptomic gapped k-mer index
cleanifier
fast lightweight tool to remove all reads of a species
sc-arcane
alignment free scRNAseq expression estimation
hackgap
hash-based counting of k-mers with gaps using a fast jit-compiled k-mer counter
