5 projects
oriongeno
OrionGeno is an end-to-end model for annotating eukaryotic genomes. You give it a genome FASTA and a species name, and it writes gene annotations, repeat annotations, or both in GTF format.
SpatialID
Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding
spatialign
spatiAlign: An Unsupervised Contrastive Learning Model for Data Integration of Spatially Resolved Transcriptomics
BatchEval
BatchEval: Batch Effects Evaluation Workflow for Multi-batch Dataset Joint Analysis
stereoAlign
A toolkit package of data integration
