10 projects
kegg-pathways-completeness
The tool counts completeness of each KEGG pathway for protein sequences.
pydantic-ro-crates
Create Research Object Crates (RO-Crates) using Pydantic types
ebi-slurpy
Python client for the Slurm REST API
mg-toolkit
Metagenomics toolkit.
prefect-slurm
Prefect worker for running flows on a Slurm HPC cluster
mgnify-pipelines-toolkit
Collection of scripts and tools for MGnify pipelines
fetch-tool
Utility to fetch public and private RAW read and assembly files from the ENA
combined-gene-caller
Combined gene caller for MGnify pipeline, to combine predictions from FragGeneScan and Prodigal
mi-pimento
A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding amplicon sequence variants
assembly-uploader
Python scripts to upload primary metagenome and metatranscriptome assemblies to ENA on a per-study basis. This script generates xmls to register a new study and create manifests necessary for submission with webin-cli.
