3dcitydb-mcp-server 0.2.0

MCP server for natural-language querying of 3DCityDB v5 semantic city models

3DCityDB MCP Server

A Model Context Protocol (MCP) server that gives AI assistants direct, natural language access to the 3DCityDB v5.

It dynamically resolves object classes, properties, codelists, and generic attributes from the database so the AI can answer spatial questions, write and execute SQL queries, and reason about CityGML data — without any manual prompt engineering.

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Features

• Dynamic schema resolution — walks the CityGML class hierarchy to discover available object classes and their properties
• Property filtering — only includes properties that actually exist in the database
• Codelist resolution — fetches code meanings only for codes present in the DB
• Generic attribute enrichment — automatic categorical detection for generic attributes
• Read-only query execution — run_query enforces SELECT-only; writes are blocked
• Prompt assembly — assemble_prompt orchestrates all tools into a complete system prompt in one call
• Gradio chat UI — browser-based interface with multi-LLM support (Anthropic, OpenAI, Ollama)
• CityGML import — one-click import via the Gradio UI (fullstack Docker mode only)

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Deployment Options

There are three ways to run the 3DCityDB MCP Server:

	Option 1: PyPI	Option 2: Docker BYOD	Option 3: Docker Fullstack
Best for	Claude Code / Claude Desktop power users	Existing 3DCityDB instances	Starting from a .gml file
Requires	Python 3.10+, running 3DCityDB	Docker, running 3DCityDB	Docker only
Gradio UI	No (uses your AI client directly)	Yes (localhost:7860)	Yes (localhost:7860)
CityGML import	Manual	Manual	Via Gradio UI
Database	Your own	Your own	Bundled (PostgreSQL + PostGIS + SFCGAL)

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Option 1: PyPI Package

Install the MCP server as a Python package and connect it to Claude Code, Claude Desktop, or any MCP-compatible client.

Prerequisites

• Python 3.10 or later
• A running 3DCityDB v5 PostgreSQL instance with PostGIS

Installation

pip install 3dcitydb-mcp-server

Or install from source for development:

git clone https://github.com/tum-gis/3dcitydb-mcp-server.git
cd 3dcitydb-mcp-server
pip install -e .

Configuration

Copy the example environment file and edit it:

# Linux / macOS
cp .env.example .env

# Windows (PowerShell)
Copy-Item .env.example .env

Then fill in your connection details:

# 3DCityDB PostgreSQL connection
CITYDB_HOST=localhost
CITYDB_PORT=5432
CITYDB_NAME=citydb
CITYDB_USER=postgres
CITYDB_PASSWORD=your_password_here
CITYDB_SCHEMA=citydb

# Query behaviour (optional)
CATEGORICAL_THRESHOLD=20
SAMPLE_VALUES_COUNT=5

# LLM API keys (only needed for the LangChain agent CLI, not for Claude Code/Desktop)
ANTHROPIC_API_KEY=sk-ant-...
# OPENAI_API_KEY=sk-...
# OLLAMA_BASE_URL=http://localhost:11434

The server loads .env automatically by searching upward from the working directory.

Verify your installation

3dcitydb-doctor

Checks Python version, required packages, database connectivity, PostGIS/SFCGAL extensions, and the 3DCityDB v5 schema. Exits 0 if all critical checks pass.

Connect to Claude Code (recommended)

From the directory containing your .env:

claude mcp add 3dcitydb -- 3dcitydb-mcp
claude

The MCP server starts automatically when you open a Claude session. Use /mcp inside the session to confirm it is connected.

Connect to Claude Desktop

Add to your claude_desktop_config.json:

{
  "mcpServers": {
    "3dcitydb": {
      "command": "3dcitydb-mcp",
      "cwd": "/path/to/your/project"
    }
  }
}

Restart Claude Desktop. The MCP server will be listed in Settings → Developer → MCP Servers.

SSE transport (remote / production)

Run the server over HTTP for remote clients:

3dcitydb-mcp-sse --host 0.0.0.0 --port 8080

• Clients connect via: http://your-server:8080/sse
• Health check: http://your-server:8080/health

LangChain agent CLI (optional)

A standalone CLI agent that uses the MCP tools directly:

3dcitydb-agent

Requires ANTHROPIC_API_KEY, OPENAI_API_KEY, or OLLAMA_BASE_URL in your .env.

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Option 2: Docker — BYOD (Bring Your Own Database)

Run the Gradio chat UI as a Docker container, connected to your existing 3DCityDB instance.

Prerequisites

• Docker with Compose (V2)
• A running 3DCityDB v5 PostgreSQL instance accessible from the Docker host

Quick Start

# 1. Clone the repository (or just download docker-compose.byod.yml + .env.example)
git clone https://github.com/tum-gis/3dcitydb-mcp-server.git
cd 3dcitydb-mcp-server/production

# 2. Copy and edit the environment file
cp .env.example .env   # Linux / macOS
# Copy-Item .env.example .env   # Windows PowerShell

Edit .env with your database connection and at least one LLM API key:

# Your existing 3DCityDB instance
CITYDB_HOST=your-db-host
CITYDB_PORT=5432
CITYDB_NAME=citydb
CITYDB_USER=citydb
CITYDB_PASSWORD=your_password
CITYDB_SCHEMA=citydb

# At least one LLM provider (the UI auto-selects based on what is available)
ANTHROPIC_API_KEY=sk-ant-...
# OPENAI_API_KEY=sk-...
# OLLAMA_BASE_URL=http://host.docker.internal:11434

# 3. Pull the pre-built image and start (works on all platforms, no build needed)
docker compose -f docker-compose.byod.yml up -d

# 4. Open the UI
# http://localhost:7860

The pre-built image (khaoulakanna1/citydb-mcp-agent:latest) is pulled automatically from Docker Hub on first run.

What it includes

• Gradio chat UI — natural-language interface to your 3DCityDB
• MCP server — spawned automatically as a subprocess inside the container
• Auto provider detection — the UI selects Anthropic, OpenAI, or Ollama based on which keys are present in .env

Gradio UI overview

Tab	What it does
Chat	Send natural-language questions; the agent writes and executes SQL automatically
SQL Inspector	Shows the last SQL query dispatched to the database (below the chat input)
MCP Inspector	Lists all active MCP tools and lets you refresh the assembled system prompt
System Prompt	Displays the full assembled system prompt sent to the LLM — useful for debugging

While the agent is working, the chat bubble shows live status: Thinking… → Running query… → Interpreting results…

Ollama users: Models without native tool-calling support (e.g. Qwen3 with extended thinking enabled) are handled automatically via a prompt-based fallback — no configuration needed. Expect roughly two LLM round-trips per question instead of one.

Building locally (optional)

If you want to build the image from source instead of pulling it:

# Linux / macOS
docker compose -f docker-compose.byod.yml up -d --build

# Windows — Docker BuildKit has a known ordering bug on Windows/NTFS.
# Disable it for local builds:
$env:DOCKER_BUILDKIT=0; docker compose -f docker-compose.byod.yml up -d --build

Windows note: The DOCKER_BUILDKIT=0 flag is only needed when building locally. Pulling the pre-built image (docker compose up -d without --build) works on Windows without any workaround.

Useful commands

# View logs
docker compose -f docker-compose.byod.yml logs -f

# Stop
docker compose -f docker-compose.byod.yml down

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Option 3: Docker — Fullstack (Bundled PostgreSQL)

Run everything — PostgreSQL (with PostGIS and SFCGAL), the 3DCityDB schema, the MCP server, and the Gradio UI — in a single Docker Compose stack. No pre-existing database needed.

Prerequisites

• Docker with Compose (V2)
• A .gml CityGML file to import (optional — the database starts empty)

Quick Start

# 1. Clone the repository (or just download docker-compose.fullstack.yml + .env.example)
git clone https://github.com/tum-gis/3dcitydb-mcp-server.git
cd 3dcitydb-mcp-server/production

# 2. Copy and edit the environment file
cp .env.example .env   # Linux / macOS
# Copy-Item .env.example .env   # Windows PowerShell

Edit .env:

# PostgreSQL settings for the bundled database
POSTGRES_DB=citydb
POSTGRES_USER=citydb
POSTGRES_PASSWORD=citydb
SRID=25832          # EPSG code for your data's coordinate system

# At least one LLM provider
ANTHROPIC_API_KEY=sk-ant-...
# OPENAI_API_KEY=sk-...
# OLLAMA_BASE_URL=http://host.docker.internal:11434

# 3. (Optional) Place your CityGML file in the data directory
mkdir -p data
cp /path/to/your/city.gml data/

# 4. Pull the pre-built image and start (works on all platforms, no build needed)
docker compose -f docker-compose.fullstack.yml up -d

# 5. Open the UI
# http://localhost:7860

Both images are pulled automatically from Docker Hub on first run. The first start takes ~60 seconds while PostgreSQL initialises.

Building locally (optional)

# Linux / macOS
docker compose -f docker-compose.fullstack.yml up -d --build

# Windows — disable BuildKit to avoid a known NTFS ordering bug:
$env:DOCKER_BUILDKIT=0; docker compose -f docker-compose.fullstack.yml up -d --build

Windows note: Only needed when building locally with --build. The default docker compose up -d (pull from Docker Hub) works on Windows without any workaround.

Import CityGML

Once the UI is open:

1. Go to the Import CityGML tab
2. Click Refresh to see files in ./production/data/
3. Select your .gml file and click Import
4. Watch the live log — the import runs via ghcr.io/3dcitydb/citydb-tool (pulled automatically)

The data directory is mounted at ./production/data/ on the host and /app/data/ inside the container.

Coordinate reference system

Set SRID to the EPSG code for your data before the first start. Common values:

Region	CRS	SRID
Germany (UTM Zone 32N)	ETRS89 / UTM Zone 32N	25832
Germany (UTM Zone 33N)	ETRS89 / UTM Zone 33N	25833
USA (NAD83 / UTM Zone 14N)	NAD83	26914
Global (WGS84)	WGS 84	4326

Useful commands

# View logs
docker compose -f docker-compose.fullstack.yml logs -f

# Stop (preserves database volume)
docker compose -f docker-compose.fullstack.yml down

# Stop and delete all data
docker compose -f docker-compose.fullstack.yml down -v

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Configuration Reference

All options are set via environment variables (.env file or Docker Compose environment block).

Database connection

Variable	Default	Description
CITYDB_HOST	localhost	PostgreSQL host
CITYDB_PORT	5432	PostgreSQL port
CITYDB_NAME	citydb	Database name
CITYDB_USER	citydb	Database user
CITYDB_PASSWORD	(required)	Database password
CITYDB_SCHEMA	citydb	3DCityDB schema name
DATABASE_URL	(auto-built)	Full PostgreSQL URL (overrides individual vars)

Fullstack only

Variable	Default	Description
POSTGRES_DB	citydb	Database name for bundled PostgreSQL
POSTGRES_USER	citydb	Database user for bundled PostgreSQL
POSTGRES_PASSWORD	citydb	Database password for bundled PostgreSQL
SRID	25832	EPSG code for the 3DCityDB spatial reference
POSTGIS_SFCGAL	true	Enable SFCGAL extension (required for CG_Volume, CG_3DArea)

LLM providers

At least one must be configured for the Docker variants. The Gradio UI auto-selects the provider based on what is available (Anthropic → OpenAI → Ollama, in that priority order).

Variable	Description
ANTHROPIC_API_KEY	Anthropic API key (sk-ant-...)
OPENAI_API_KEY	OpenAI API key (sk-...)
OLLAMA_BASE_URL	Ollama base URL (e.g. http://host.docker.internal:11434)

Query behaviour

Variable	Default	Description
CATEGORICAL_THRESHOLD	20	Max distinct values before a column is treated as categorical
SAMPLE_VALUES_COUNT	5	Number of sample values shown per non-categorical column

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Available MCP Tools

Static (cached per session)

Tool	Description
get_database_schema	3DCityDB v5 table structures and foreign key relationships
get_query_guidelines	SQL best practices and optimisation tips for 3DCityDB

Dynamic (called at session start)

Tool	Description
scan_objectclasses	Discover available object classes with full CityGML hierarchy
resolve_properties(objectclass_id)	Resolve properties with codelists for a given class
get_generic_attributes	Generic attributes with categorical detection
get_db_context_snapshot	SRS, bounding box, feature counts, database statistics
get_lod_config	Available Levels of Detail in the database
get_examples(objectclass_ids)	SQL examples filtered to existing object classes

Runtime (per query)

Tool	Description
run_query(sql)	Execute read-only SQL (SELECT/WITH only) against 3DCityDB
get_session_context	Session management and state
update_module_selection	Narrow scope to specific object classes
get_history	Conversation history for a session
submit_feedback	Log query feedback

Assembly

Tool	Description
assemble_prompt	Orchestrates all tools into a complete system prompt in one call

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Architecture

  Claude Code / Claude Desktop / any MCP client
                      │
               MCP Protocol (stdio / SSE)
                      │
       ┌──────────────┴──────────────┐
       │   3DCityDB MCP Server       │
       │   assemble_prompt()         │
       │   scan_objectclasses()      │
       │   run_query()               │
       └──────────────┬──────────────┘
                      │
                 3DCityDB v5
               (PostgreSQL + PostGIS)


  Browser ──► Gradio UI (port 7860)      [Docker variants only]
                      │
               LiteLLM (Anthropic / OpenAI / Ollama)
                      │
               MCP Client (spawns citydb-mcp subprocess)
                      │
               3DCityDB MCP Server
                      │
                 3DCityDB v5

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Citation

This work was developed at the Chair of Geoinformatics, TUM, in the group of Prof. Dr. Thomas H. Kolbe.

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License

The 3DCityDB MCP server is distributed under the Apache License 2.0. See LICENCE for details.