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Collection of simple utilities used when building bioinformatics tools

  • cmd_exe - simple wrapper around subprocess.

  • math_utils - math and statistics utils

  • multiprocess_utils - tools for making Consumer/Producer multithreading Pools

  • pedigree - handles pedigree files in a friendly datastructure

  • setup_logging - standardized setup of python logging

  • vcf_utils - little methods for editing vcf format/info

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