A parsing tool for AMP tools.
Project description
AMPcombi : A parsing, filtering and annotation workflow for tools predicting AntiMicrobial Peptide genes
AMPcombi and its submodules provide a command-line interface to:
- parse the results of multiple antimicrobial peptide (AMP) prediction tools into a single table
- align the AMP hits against a reference AMP database for functional and structural classifications
- filter the AMP hits according to their physio-chemical properties
- cluster the filtered AMP hits into AMP families
- predict signaling peptides if present along the prepropeptide sequence
📕 The full documentation for AMPcombi can be accessed here.
📎 If you plan to use AMPcombi please don't forget to cite us 💚
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
ampcombi-2.0.1.tar.gz
(30.2 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
AMPcombi-2.0.1-py3-none-any.whl
(65.9 kB
view details)
File details
Details for the file ampcombi-2.0.1.tar.gz.
File metadata
- Download URL: ampcombi-2.0.1.tar.gz
- Upload date:
- Size: 30.2 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.1.1 CPython/3.11.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
4bef05aa8433d991b76b81cb2338396c064f2ace5c73642411b2a2467524a0eb
|
|
| MD5 |
15a14ef44fc1e866984549227c8fec3b
|
|
| BLAKE2b-256 |
a0d366d70da14aaedbbc7ed5282e03f8963c5e17f77d47fa2d9bd6f739d8407c
|
File details
Details for the file AMPcombi-2.0.1-py3-none-any.whl.
File metadata
- Download URL: AMPcombi-2.0.1-py3-none-any.whl
- Upload date:
- Size: 65.9 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.1.1 CPython/3.11.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
74bc25d67f2d0a2c36c1424ec249b00ffce5680ae1e12501ce1a305c27b5781e
|
|
| MD5 |
9e872b45cdc5d52bd52092a8f9be6330
|
|
| BLAKE2b-256 |
866b29d44316a064ededb62db5bb1785400dee24cccaa19af1f8b7bc0804c969
|
