AdaptFTIR 0.1.0

Domain adaptation for FTIR spectra

AdaptFTIR

Description

This repository contains a Python implementation of the AdaptFTIR method described in the paper entitled "Title" (doi url).

Installation

The package is available via PyPI:

pip install AdaptFTIR

Usage

For detailed information on how to initialize the AdaptFTIR method and configure its parameters, please refer to the example_usage.ipynb Jupyter Notebook and the code documentation in the AdaptFTIR.py file. The basic usage format is as follows:

from AdaptFTIR import AdaptFTIR

# Initialize an instance of AdaptFTIR with a calibration set
adapter = AdaptFTIR(spectra=<your_spectra_to_augment>,
              subject_ids=<your_subject_ids_for_spectra_to_augment>,
              calibration_set=<your_calibration_set>,
              calibration_ids=<your_calibration_set_subject_ids>)

# Create synthetic samples based on an input set of training samples X and associated sample labels y
X_gen, y_gen = AdaptFTIR.run(n_per_subject_id=<your_n_per_subject_id>)

Citation

Citation goes here