Multilocus and hybrid peeling
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AlphaPeel
AlphaPeel is a software package for calling, phasing, and imputing genotype and sequence data in pedigree populations. This program implements single-locus peeling, multi-locus peeling, and hybrid peeling. A complete description of these methods is given in the suggested citation:
Whalen, A, Ros-Freixedes, R, Wilson, DL, Gorjanc, G, Hickey, JM. (2018). Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees. Genetics Selection Evolution; doi: https://doi.org/10.1186/s12711-018-0438-2
User guide
See https://alphapeel.readthedocs.io/en/latest
Conditions of use
AlphaPeel is fully and freely available for all use under the MIT License.
Requirements
- Python 3
- NumPy
- Numba
Installation
See https://alphapeel.readthedocs.io/en/latest/get_started.html#install-software
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