Python tool for automatic axon and myelin segmentation
Project description
# AxonDeepSeg: Axon Deep Segmentation Toolbox
[](https://beta.mybinder.org/v2/gh/neuropoly/axondeepseg/master)
Segment axon and myelin from microscopy data using Deep Learning techniques. Written in Python. Methods based on deep convolutional neural networks. The U-Net from ([Ronneberger et al.](https://arxiv.org/abs/1505.04597)) is used as a pixel classifier model.
For more information, see the [documentation website](https://neuropoly.github.io/axondeepseg).
## Citation
If you use this work in your research, please cite it as follows:
TODO ad arxiv ref
Copyright (c) 2017 NeuroPoly (Polytechnique Montreal)
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distributions
Built Distributions
Hashes for AxonDeepSeg-0.5-py2.py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 33763cf5b5c434a7177812d72e991bf8344f06f79c7effbc43a59487e4d8989c |
|
| MD5 | 6dfb6569fb7e9430425efff204d3e753 |
|
| BLAKE2b-256 | 2a1d73d26148090d9ab7977473026e9dca05b7329ef988e588a5c2bf1478fbf3 |
Hashes for AxonDeepSeg-0.4-py2.py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 5ae330add77ccc1d966fffbe853c69024ddcd929636c24d2bf312b2a67fd9042 |
|
| MD5 | ba67b8ee66ba4ea34955cd24a367fd30 |
|
| BLAKE2b-256 | e3d5a49df8949782baeb58f111967b6f22910cb9c3b62bdba2b00f2e29c62b96 |
Hashes for AxonDeepSeg-0.2-py2.py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 1fab97af81764898bbbc0c68f9479942188dd883e8e55ff3a17500d115e4d9c1 |
|
| MD5 | 02b93fd39aade846cd2089357ad083f4 |
|
| BLAKE2b-256 | a6732ef1ad721c43bbbfcf6d2c5d3133f3baa19ae52f277528e85d0580ac2815 |
Hashes for AxonDeepSeg-0.1-py2.py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | f5b1f7e46c487b4a2b2e6474ce10ac2e9a9993e36bdf5e88bc17482a357ab29d |
|
| MD5 | fdedb999c911c194aada3b58cb06fe38 |
|
| BLAKE2b-256 | 751db5f1589210b4375fb1c6db486ebd5a3620feaf780651a94e0b7aaa763686 |
](https://beta.mybinder.org/v2/gh/neuropoly/axondeepseg/master){kind=link}