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A Python package for BayesForge modeling and diagnostics.

Project description

BayesForge for Python

A unified probabilistic programming library, bringing JAX-powered BayesForge to the Python, R and Julia ecosystem.
Run bespoke models on CPU, GPU, or TPU with Julia's native syntax.

Website bioRxiv Python License: GPL (>= 3)


One Mental Model. Three Languages.

BayesForge (BF) provides a unified experience across Julia, Python, and R. Whether you work in R's formula syntax, Python's object-oriented approach, or Julia's mathematical elegance, the model logic remains consistent.

  • Zero Context Switching: Variable names, distribution signatures, and model logic remain consistent across all implementations.
  • NumPyro Power: All interfaces compile down to XLA via JAX for blazing fast inference.
  • Rich Diagnostics: Seamless integration with ArviZ for posterior analysis.

Compare the Syntax

Python Syntax Julia Syntax R Syntax
def model(height, weight):
    # Priors
    sigma = bf.dist.uniform(0, 50, name='sigma', shape=(1,))
    alpha = bf.dist.normal(178, 20, name='alpha', shape=(1,))
    beta  = bf.dist.normal(0, 1, name='beta', shape=(1,))

    # Likelihood
    mu = alpha + beta * weight
    bf.dist.normal(mu, sigma, obs=height)
@BF function model(weight, height)
    # Priors
    sigma = bf.dist.uniform(0, 50, name='sigma', shape=(1,))
    alpha = bf.dist.normal(178, 20, name='alpha', shape=(1,))
    beta  = bf.dist.normal(0, 1, name='beta', shape=(1,))

    # Likelihood
    mu = alpha + beta * weight
    bf.dist.normal(mu, sigma, obs=height)
end
model <- function(height, weight){
  # Priors
  sigma = bf.dist.uniform(0, 50, name='sigma', shape=c(1))
  alpha = bf.dist.normal(178, 20, name='alpha', shape=c(1))
  beta  = bf.dist.normal(0, 1, name='beta', shape=c(1))

  # Likelihood
  mu = alpha + beta * weight
  bf.dist.normal(mu, sigma, obs=height)
}

Built for Speed

Leveraging Just-In-Time (JIT) compilation via JAX, BF outperforms traditional engines on standard hardware and unlocks massive scalability on GPU clusters for large datasets.

Benchmark: Network Size 400 (Lower is Better)

Engine Execution Time Relative Performance
STAN (CPU) ████████████████████████████ Baseline
BF (CPU) ████████████ ~30x Faster
BF (GPU) ██ ~200x Faster

> Comparison of execution time for a Social Relations Model. Source: Sosa et al. (2026).


Installation & Setup

1. Install Python

Download and install Python 3.10 or later

2. Install Package

From pip

pip install BayesForge

Development Installation

pip install git+https://github.com/BGN-for-ASNA/BF.git

Or clone the repository and activate it locally:

git clone https://github.com/BGN-for-ASNA/BF.git
cd BF

Then in Python:

pip install -e .

3. Initialize Environment

from BF import BF
m = BF()

4. Select Backend

Choose "cpu", "gpu", or "tpu" when importing the library.

# Initialize on CPU (default)
m = BF(platform="cpu")

# Or on GPU (requires JAX GPU installation)
m = BF(platform="gpu")

Quick Start

from BayesForge import bf

# Initialize BF
m = bf('cpu')

# Generate some data
x = m.dist.normal(0, 1, shape=(100,), sample=True)
y = m.dist.normal(0.2 + 0.6 * x, 1.2, sample=True)

# Define a Bayesian linear regression model
def linear_model(x, y):
    alpha = m.dist.normal(loc=0, scale=1, name="alpha")
    beta  = m.dist.normal(loc=0, scale=1, name="beta")
    sigma = m.dist.exponential(1, name="sigma")
    mu = alpha + beta * x
    m.dist.normal(mu, sigma, obs=y)


# Fit the model
m.fit(linear_model, num_warmup=1000, num_samples=1000, num_chains=1)

# Display results
m.summary()

# Plot results with @pyplot
m.plot_trace()

Features

Data Manipulation

  • One-hot encoding
  • Index variable conversion
  • Scaling and normalization

Modeling (via NumPyro)

  • Linear & Generalized Linear Models: Regression, Binomial, Poisson, Negative Binomial, etc.
  • Hierarchical/Multilevel Models: Varying intercepts and slopes.
  • Time Series & Processes: Gaussian Processes, Gaussian Random Walks, State Space Models.
  • Mixture Models: GMM, Dirichlet Process Mixtures.
  • Network Models: Network-based diffusion, Block models.
  • Bayesian Neural Networks (BNN).

Diagnostics (via ArviZ)

  • Posterior summary statistics and plots.
  • Trace plots, Density plots, Autocorrelation.
  • WAIC and LOO (ELPD) model comparison.
  • R-hat and Effective Sample Size (ESS).

Available Distributions

The package provides wrappers for a comprehensive set of distributions from NumPyro.

Continuous

  • m.dist.normal, m.dist.uniform, m.dist.student_t
  • m.dist.cauchy, m.dist.halfcauchy, m.dist.halfnormal
  • m.dist.gamma, m.dist.inverse_gamma, m.dist.exponential
  • m.dist.beta, m.dist.beta_proportion
  • m.dist.laplace, m.dist.asymmetric_laplace
  • m.dist.log_normal, m.dist.log_uniform
  • m.dist.pareto, m.dist.weibull, m.dist.gumbel
  • m.dist.chi2, m.dist.gompertz

Discrete

  • m.dist.bernoulli, m.dist.binomial
  • m.dist.poisson, m.dist.negative_binomial
  • m.dist.geometric, m.dist.discrete_uniform
  • m.dist.beta_binomial, m.dist.zero_inflated_poisson

Multivariate

  • m.dist.multivariate_normal, m.dist.multivariate_student_t
  • m.dist.dirichlet, m.dist.dirichlet_multinomial
  • m.dist.multinomial
  • m.dist.lkj, m.dist.lkj_cholesky
  • m.dist.wishart, m.dist.wishart_cholesky

Time Series & Stochastic Processes

  • m.dist.gaussian_random_walk
  • m.dist.gaussian_state_space
  • m.dist.euler_maruyama
  • m.dist.car (Conditional AutoRegressive)

Mixtures & Truncated

  • m.dist.mixture, m.dist.mixture_same_family
  • m.dist.truncated_normal, m.dist.truncated_cauchy
  • m.dist.lower_truncated_power_law

(See package documentation for the full list)


Documentation

For full documentation and examples visitOfficial website](https://s-sosa.com/BF)


Platform Support

  • ✅ Linux
  • ✅ macOS
  • ✅ Windows

GPU support available on compatible systems with JAX GPU installation.


Related Packages

  • BFR - R implementation
  • BFJ - Julia implementation

**BayesForge**

Based on "The BayesForge library for Python, R, Julia" by Sosa, McElreath, & Ross (2026).

Official website | Issues | Quick Start

© 2026 BayesForge Team. Released under GPL-3.0.

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