circular RNA identification from Nanopore
Project description
CIRI-long: circular RNA identifier using long-read sequencing data
Circular RNA Identification for Long-Reads Nanopore Sequencing Data
Documentation
Documentation is available online at https://ciri-cookbook.readthedocs.io/en/latest
Author
Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)
Maintainer: Jinyang Zhang
Release Notes
- version 1.1.0: Add convert_bed.py, update pyccs dependency, fixed bugs
- version 1.0.3: Add output of circRNA isoform usage index, fixed bugs
- version 1.0.2: Add fast mode for ccs detection and option for user-provided circRNA annotation
- version 1.0.1: Fixed bug
- version 1.0: First released version
License
The code is released under the MIT License. See the LICENSE file for more detail
Citing CIRI-long
Zhang, J., Hou, L., Zuo, Z., Ji, P., Zhang, X., Xue, Y., & Zhao, F. (2021). Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long. Nature Biotechnology. https://doi.org/10.1038/s41587-021-00842-6
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