CMGDB (Conley Morse Graph Database) Python Extension

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Project description

CMGDB

Conley Morse Graph Database

Overview

This project uses combinatorial and topological methods to compute dynamics of discrete dynamical systems.

Installation

Install the latest tagged version:

pip install CMGDB

To uninstall:

pip uninstall CMGDB

Documentation and examples

To get started on how to run the code see the examples in the Jupyter notebooks in the examples folder.

In particular the notebooks Examples.ipynb, Gaussian_Process_Example.ipynb, and Conley_Index_Examples.ipynb present basic examples on how to run the code and are a good starting point.

Here is an old survey and a talk that might be useful.

Installing from source and dependencies

To install from source you need a C++ compiler and the following dependencies installed: Boost, GMP, and the Succinct Data Structure Library (SDSL). Assuming you have these dependencies installed in your system, you can install from source with the command:

pip install --force-reinstall --no-deps --no-cache-dir git+https://github.com/marciogameiro/CMGDB.git

Alternatively, you can clone the GitHub repository and install with:

git clone https://github.com/marciogameiro/CMGDB.git
cd CMGDB
./install.sh

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This version

1.3.2

1.3.1

1.3.0

1.2.0

1.1.1

1.1.0

1.0.8

1.0.7

1.0.6

1.0.5

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

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