A package to view Nifti files in a BIDS dataset and generate QC plots.
Project description
CPAC-QC Plotting App
Overview
The CPAC-qc Plotting App is a tool designed to generate quality control plots for the CPAC (Configurable Pipeline for the Analysis of Connectomes) outputs. This app helps in visualizing and assessing the quality of neuroimaging data processed through CPAC.
Features
- Generate bulk or subject specific plots
Requirements
- A html viewing tool or extension
- BIDS dir with
.nii.gzimages in it.
Installation
pip install CPACqc
Usage
- Running Single Subject
cpacqc -d path/to/bids_dir -o path/to/output-qc-dir -s subject-id -n number-of-procs
- Running all Subjects in the dir
cpacqc -d path/to/bids_dir -o path/to/output-qc-dir -n number-of-procs
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