This release is a pre-release and may not be stable for production use.
CtrlF-TF
CtrlF-TF is a python library and command line tool that calls transcription factor binding sites in DNA sequences. It does this by compiling high-throughput k-mer data into ranked aligned sequences containing binding sites. These sequences are then searched in a given string (ctrl-f) for matches.
This program has not yet completed peer-review and is currently designated as a beta version, with a 1.0 release afterwards.
Installation
CtrlF-TF can be installed from pypi with the following command:
pip install CtrlF-TF
This installs the ctrlf_tf python module and the ctrlf command line tool. The package is compatible with Linux and macOS. It has not been tested on Windows.
Documentation
The CtrlF-TF documentation can be found here: https://zmielko.github.io/CtrlF-TF
1 maintainer
Metadata
1 maintainer
Release files for CtrlF-TF 1.0b5
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| ctrlf_tf-1.0b5.tar.gz | 39.9 kB | Without provenance | Details for ctrlf_tf-1.0b5.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| CtrlF_TF-1.0b5-py3-none-any.whl | Python 3 | none | any | Details for CtrlF_TF-1.0b5-py3-none-any.whl |
Total release size: 84.7 kB
Release files / ctrlf_tf-1.0b5.tar.gz
| Download URL | ctrlf_tf-1.0b5.tar.gz |
|---|---|
| Size | 39.9 kB |
| Tags | Source |
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twine/5.1.0 CPython/3.10.12
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Release files / CtrlF_TF-1.0b5-py3-none-any.whl
| Download URL | CtrlF_TF-1.0b5-py3-none-any.whl |
|---|---|
| Size | 44.9 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.0 CPython/3.10.12
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Security for CtrlF-TF 1.0b5
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