Protein-DNA binding site caller from kmer data
Project description
CtrlF-TF
CtrlF-TF is a python library and command line tool that calls transcription factor binding sites in DNA sequences. It does this by compiling high-throughput k-mer data into ranked aligned sequences containing binding sites. These sequences are then searched in a given string (ctrl-f) for matches.
This program has not yet completed peer-review and is currently designated as a beta version, with a 1.0 release afterwards.
Installation
CtrlF-TF can be installed from pypi with the following command:
pip install CtrlF-TF
This installs the ctrlf_tf python module and the ctrlf command line tool. The package is compatible with Linux and macOS. It has not been tested on Windows.
Documentation
The CtrlF-TF documentation can be found here: https://zmielko.github.io/CtrlF-TF
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