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Implementation of Dynamic Ensemble Selection methods

Project description

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DESlib

DESlib is an easy-to-use ensemble learning library focused on the implementation of the state-of-the-art techniques for dynamic classifier and ensemble selection. The library is is based on scikit-learn, using the same method signatures: fit, predict, predict_proba and score. All dynamic selection techniques were implemented according to the definitions from [1].

Dynamic Selection:

Dynamic Selection (DS) refers to techniques in which the base classifiers are selected dynamically at test time, according to each new sample to be classified. Only the most competent, or an ensemble of the most competent classifiers is selected to predict the label of a specific test sample. The rationale for these techniques is that not every classifier in the pool is an expert in classifying all unknown samples, but rather each base classifier is an expert in a different local region of the feature space.

DS is one of the most promising MCS approaches (Multiple Classifier Systems) due to an increasing number of empirical studies reporting superior performance over static combination methods. Such techniques have achieved better classification performance especially when dealing with small-sized and imbalanced datasets.

Installation:

The package can be installed using pip:

Stable version:

pip install deslib

Latest version (under development):

pip install git+https://github.com/scikit-learn-contrib/DESlib

Dependencies:

DESlib is tested to work with Python 3.5, 3.6 and 3.7. The dependency requirements are:

  • scipy(>=1.2.0)
  • numpy(>=1.10.4)
  • scikit-learn(>=0.19.0)

These dependencies are automatically installed using the pip commands above.

Examples:

Here we show an example using the KNORA-E method with random forest as a pool of classifiers:

from deslib.des.knora_e import KNORAE

# Train a pool of 10 classifiers
pool_classifiers = RandomForestClassifier(n_estimators=10)
pool_classifiers.fit(X_train, y_train)

# Initialize the DES model
knorae = KNORAE(pool_classifiers)

# Preprocess the Dynamic Selection dataset (DSEL)
knorae.fit(X_dsel, y_dsel)

# Predict new examples:
knorae.predict(X_test)

The library accepts any list of classifiers (compatible with scikit-learn) as input, including a list containing different classifier models (heterogeneous ensembles). More examples on how to use the API can be found in the documentation and in the Examples directory.

Organization:

The library is divided into four modules:

  1. deslib.des: Implementation of DES techniques (Dynamic Ensemble Selection).
  2. deslib.dcs: Implementation of DCS techniques (Dynamic Classifier Selection).
  3. deslib.static: Implementation of baseline ensemble methods.
  4. deslib.util: A collection of aggregation functions and diversity measures for ensemble of classifiers.
  • DES techniques currently available are:
    1. META-DES [7] [8] [15]
    2. K-Nearest-Oracle-Eliminate (KNORA-E) [3]
    3. K-Nearest-Oracle-Union (KNORA-U) [3]
    4. Dynamic Ensemble Selection-Performance(DES-P) [12]
    5. K-Nearest-Output Profiles (KNOP) [9]
    6. Randomized Reference Classifier (DES-RRC) [10]
    7. DES Kullback-Leibler Divergence (DES-KL) [12]
    8. DES-Exponential [21]
    9. DES-Logarithmic [11]
    10. DES-Minimum Difference [21]
    11. DES-Clustering [16]
    12. DES-KNN [16]
    13. DES Multiclass Imbalance (DES-MI) [24]
  • DCS techniques currently available are:
    1. Modified Classifier Rank (Rank) [19]
    2. Overall Local Accuracy (OLA) [4]
    3. Local Class Accuracy (LCA) [4]
    4. Modified Local Accuracy (MLA) [23]
    5. Multiple Classifier Behaviour (MCB) [5]
    6. A Priori Selection (A Priori) [6]
    7. A Posteriori Selection (A Posteriori) [6]
  • Baseline methods:
    1. Oracle [20]
    2. Single Best [2]
    3. Static Selection [2]
    4. Stacked Classifier [25]

Variations of each DES techniques are also provided by the library (e.g., different versions of the META-DES framework).

The following techniques are also available for all methods:
  • For DES techniques, the combination of the selected classifiers can be done as Dynamic Selection (majority voting), Dynamic Weighting (weighted majority voting) or a Hybrid (selection + weighting).
  • For all DS techniques, Dynamic Frienemy Pruning (DFP) [13] can be used.
  • For all DS techniques, Instance Hardness (IH) can be used to classify easy samples with a KNN and hard samples using the DS technique. More details on IH and Dynamic Selection can be found in [14].

As an optional requirement, the fast KNN implementation from FAISS can be used to speed-up the computation of the region of competence.

Citation

If you use DESLib in a scientific paper, please consider citing the following paper:

Rafael M. O. Cruz, Luiz G. Hafemann, Robert Sabourin and George D. C. Cavalcanti DESlib: A Dynamic ensemble selection library in Python. arXiv preprint arXiv:1802.04967 (2018).

@article{cruz_deslib:2018,
    title = {{DESlib}: {A} {Dynamic} ensemble selection library in {Python}},
    journal = {arXiv preprint arXiv:1802.04967},
    author = {Cruz, Rafael M. O. and Hafemann, Luiz G. and Sabourin, Robert and Cavalcanti, George D. C.},
    year = {2018}
}

References:

[1]: R. M. O. Cruz, R. Sabourin, and G. D. Cavalcanti, “Dynamic classifier selection: Recent advances and perspectives,” Information Fusion, vol. 41, pp. 195 – 216, 2018.
[2](1, 2) : A. S. Britto, R. Sabourin, L. E. S. de Oliveira, Dynamic selection of classifiers - A comprehensive review, Pattern Recognition 47 (11) (2014) 3665–3680.
[3](1, 2) : A. H. R. Ko, R. Sabourin, u. S. Britto, Jr., From dynamic classifier selection to dynamic ensemble selection, Pattern Recognition 41 (2008) 1735–1748.
[4](1, 2) : K. Woods, W. P. Kegelmeyer, Jr., K. Bowyer, Combination of multiple classifiers using local accuracy estimates, IEEE Transactions on Pattern Analysis Machine Intelligence 19 (1997) 405–410.
[5]: G. Giacinto, F. Roli, Dynamic classifier selection based on multiple classifier behaviour, Pattern Recognition 34 (2001) 1879–1881.
[6](1, 2) : L. Didaci, G. Giacinto, F. Roli, G. L. Marcialis, A study on the performances of dynamic classifier selection based on local accuracy estimation, Pattern Recognition 38 (11) (2005) 2188–2191.
[7]: R. M. O. Cruz, R. Sabourin, G. D. C. Cavalcanti, T. I. Ren, META-DES: A dynamic ensemble selection framework using meta-learning, Pattern Recognition 48 (5) (2015) 1925–1935.
[8]: Cruz, R.M., Sabourin, R. and Cavalcanti, G.D., 2015, July. META-DES. H: a dynamic ensemble selection technique using meta-learning and a dynamic weighting approach. In Neural Networks (IJCNN), 2015 International Joint Conference on (pp. 1-8)
[9]: P. R. Cavalin, R. Sabourin, C. Y. Suen, Dynamic selection approaches for multiple classifier systems, Neural Computing and Applications 22 (3-4) (2013) 673–688.
[10]: T.Woloszynski, M. Kurzynski, A probabilistic model of classifier competence for dynamic ensemble selection, Pattern Recognition 44 (2011) 2656–2668.
[11]: T.Woloszynski, M. Kurzynski, A measure of competence based on randomized reference classifier for dynamic ensemble selection, in: International Conference on Pattern Recognition (ICPR), 2010, pp. 4194–4197.
[12](1, 2) : T. Woloszynski, M. Kurzynski, P. Podsiadlo, G. W. Stachowiak, A measure of competence based on random classification for dynamic ensemble selection, Information Fusion 13 (3) (2012) 207–213.
[13]: Oliveira, D.V.R., Cavalcanti, G.D.C. and Sabourin, R., Online Pruning of Base Classifiers for Dynamic Ensemble Selection, Pattern Recognition, vol. 72, December 2017, pp 44-58.
[14]: Cruz RM, Zakane HH, Sabourin R, Cavalcanti GD. Dynamic Ensemble Selection VS K-NN: why and when Dynamic Selection obtains higher classification performance?.
[15]: R. M. O. Cruz, R. Sabourin, G. D. C. Cavalcanti, META-DES.Oracle: Meta-learning and feature selection for dynamic ensemble selection, Information Fusion 38 (2017) 84–103.Nov 30;38:84-103.
[16](1, 2) : R. G. F. Soares, A. Santana, A. M. P. Canuto, M. C. P. de Souto, Using accuracy and diversity to select classifiers to build ensembles, Proceedings of the International Joint Conference on Neural Networks (2006) 1310–1316.
[17]: L. I. Kuncheva, Combining Pattern Classifiers: Methods and Algorithms, Wiley-Interscience, 2004.
[18]: Shipp, Catherine A., and Ludmila I. Kuncheva. “Relationships between combination methods and measures of diversity in combining classifiers.” Information fusion 3.2 (2002): 135-148.
[19]: M. Sabourin, A. Mitiche, D. Thomas, G. Nagy, Classifier combination for handprinted digit recognition, International Conference on Document Analysis and Recognition (1993) 163–166.
[20]: L. I. Kuncheva, A theoretical study on six classifier fusion strategies, IEEE Transactions on Pattern Analysis and Machine Intelligence 24 (2) (2002) 281–286.
[21](1, 2) : B. Antosik, M. Kurzynski, New measures of classifier competence – heuristics and application to the design of multiple classifier systems., in: Computer recognition systems 4., 2011, pp. 197–206.
[22]: Smith, Michael R., Tony Martinez, and Christophe Giraud-Carrier. “An instance level analysis of data complexity.” Machine learning 95.2 (2014), pp 225-256.
[23]: P. C. Smits, Multiple classifier systems for supervised remote sensing image classification based on dynamic classifier selection, IEEE Transactions on Geoscience and Remote Sensing 40 (4) (2002) 801–813.
[24]: García, S., Zhang, Z.L., Altalhi, A., Alshomrani, S. and Herrera, F., “Dynamic ensemble selection for multi-class imbalanced datasets.” Information Sciences 445 (2018): 22-37.
[25]: Wolpert, David H. “Stacked generalization.” Neural networks 5, no. 2 (1992): 241-259.

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