DRMAAtic-lib 1.0.8

DRMAA interface for Slurm/SGE DRMs @ BioComputingUP lab

DRMAAtic-lib

Scheduling libraries for DRMAAtic @BioCompUP, wrapping the drmaa-python library and adding the implementations for Slurm and SGE.

Installation

pip install DRMAAtic-lib

This will also pull the drmaa-python library. You can see the latest version of the library here.

Requirements

• Slurm or SGE installed
• libslurm-dev library for Slurm or gridengine-dev for SGE, both downloadable with apt
• libdrmaa C bindings for Slurm or SGE
  • slurm-drmaa for Slurm
• drmaa-python python library

ENV variables

Set the env variables for the drmaa-python library. With PyCharm you can set this env variables in the run configuration.

SGE

export SGE_ROOT=/path/to/gridengine
export SGE_CELL=default

SLURM

Set the path to the libdrmaa library C binding

export DRMAA_LIBRARY_PATH=/usr/lib/slurm-drmaa/libdrmaa.so