DSGRN
Dynamic Signatures Generated by Regulatory Networks
Overview
This project uses computational dynamics to produce dynamical surveys of switching models of regulatory networks. The resulting data is stored into a database which can then be queried for further research.
Installation
To get the latest tagged version from the PyPI repository:
pip install DSGRN
To uninstall:
pip uninstall DSGRN
Installing from source
Assuming you have a C++ compiler and the Python 3 dependencies installed on your system, you can install from source with the command:
pip install --force-reinstall --no-deps --no-cache-dir git+https://github.com/marciogameiro/DSGRN.git
Alternatively, you can clone the GitHub repository and install with:
git clone https://github.com/marciogameiro/DSGRN.git
cd DSGRN
./install.sh
Usage
To check if DSGRN is installed do
import DSGRN
network = DSGRN.Network("X1 : (~X1)(X2)\n X2 : (X1)(~X2)")
DSGRN.DrawGraph(network)
This should plot the network
See the GettingStarted.ipynb jupyter notebook in the Tutorials folder for the basic usage of DSGRN.
Examples and Documentation
See Tutorials folder for examples.
Also see the documentation.
Metadata
Release files for DSGRN 1.10.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| dsgrn-1.10.0.tar.gz | 16.8 MB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| dsgrn-1.10.0-pp311-pypy311_pp73-macosx_11_0_arm64.whl | PyPy 3.11 | PyPy 3.11 7.3 | macOS 11.0+ ARM64 | Details |
| dsgrn-1.10.0-pp311-pypy311_pp73-macosx_10_15_x86_64.whl | PyPy 3.11 | PyPy 3.11 7.3 | macOS 10.15+ x86-64 | Details |
| dsgrn-1.10.0-cp314-cp314t-win_amd64.whl | CPython 3.14 | CPython 3.14 free-threading | Windows x86-64 | Details |
| dsgrn-1.10.0-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl | CPython 3.14 | CPython 3.14 free-threading | Linux glibc 2.28+ x86-64, Linux glibc 2.27+ x86-64 | Details |
| dsgrn-1.10.0-cp314-cp314t-manylinux_2_26_i686.manylinux_2_28_i686.whl | CPython 3.14 | CPython 3.14 free-threading | Linux glibc 2.28+ x86-32, Linux glibc 2.26+ x86-32 | Details |
| dsgrn-1.10.0-cp314-cp314t-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl | CPython 3.14 | CPython 3.14 free-threading | Linux glibc 2.28+ ARM64, Linux glibc 2.26+ ARM64 | Details |
| dsgrn-1.10.0-cp314-cp314t-macosx_11_0_arm64.whl | CPython 3.14 | CPython 3.14 free-threading | macOS 11.0+ ARM64 | Details |
| dsgrn-1.10.0-cp314-cp314t-macosx_10_15_x86_64.whl | CPython 3.14 | CPython 3.14 free-threading | macOS 10.15+ x86-64 | Details |
| dsgrn-1.10.0-cp314-cp314-win_amd64.whl | CPython 3.14 | CPython 3.14 | Windows x86-64 | Details |
| dsgrn-1.10.0-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl | CPython 3.14 | CPython 3.14 | Linux glibc 2.28+ x86-64, Linux glibc 2.27+ x86-64 | Details |
| dsgrn-1.10.0-cp314-cp314-manylinux_2_26_i686.manylinux_2_28_i686.whl | CPython 3.14 | CPython 3.14 | Linux glibc 2.28+ x86-32, Linux glibc 2.26+ x86-32 | Details |
| dsgrn-1.10.0-cp314-cp314-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl | CPython 3.14 | CPython 3.14 | Linux glibc 2.26+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| dsgrn-1.10.0-cp314-cp314-macosx_11_0_arm64.whl | CPython 3.14 | CPython 3.14 | macOS 11.0+ ARM64 | Details |
| dsgrn-1.10.0-cp314-cp314-macosx_10_15_x86_64.whl | CPython 3.14 | CPython 3.14 | macOS 10.15+ x86-64 | Details |
| dsgrn-1.10.0-cp313-cp313-win_amd64.whl | CPython 3.13 | CPython 3.13 | Windows x86-64 | Details |
| dsgrn-1.10.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.28+ x86-64, Linux glibc 2.27+ x86-64 | Details |
| dsgrn-1.10.0-cp313-cp313-manylinux_2_26_i686.manylinux_2_28_i686.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.26+ x86-32, Linux glibc 2.28+ x86-32 | Details |
| dsgrn-1.10.0-cp313-cp313-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.26+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| dsgrn-1.10.0-cp313-cp313-macosx_11_0_arm64.whl | CPython 3.13 | CPython 3.13 | macOS 11.0+ ARM64 | Details |
| dsgrn-1.10.0-cp313-cp313-macosx_10_13_x86_64.whl | CPython 3.13 | CPython 3.13 | macOS 10.13+ x86-64 | Details |
| dsgrn-1.10.0-cp312-cp312-win_amd64.whl | CPython 3.12 | CPython 3.12 | Windows x86-64 | Details |
| dsgrn-1.10.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.28+ x86-64, Linux glibc 2.27+ x86-64 | Details |
| dsgrn-1.10.0-cp312-cp312-manylinux_2_26_i686.manylinux_2_28_i686.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.26+ x86-32, Linux glibc 2.28+ x86-32 | Details |
| dsgrn-1.10.0-cp312-cp312-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.26+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| dsgrn-1.10.0-cp312-cp312-macosx_11_0_arm64.whl | CPython 3.12 | CPython 3.12 | macOS 11.0+ ARM64 | Details |
| dsgrn-1.10.0-cp312-cp312-macosx_10_13_x86_64.whl | CPython 3.12 | CPython 3.12 | macOS 10.13+ x86-64 | Details |
| dsgrn-1.10.0-cp311-cp311-win_amd64.whl | CPython 3.11 | CPython 3.11 | Windows x86-64 | Details |
| dsgrn-1.10.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.27+ x86-64, Linux glibc 2.28+ x86-64 | Details |
| dsgrn-1.10.0-cp311-cp311-manylinux_2_26_i686.manylinux_2_28_i686.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.26+ x86-32, Linux glibc 2.28+ x86-32 | Details |
| dsgrn-1.10.0-cp311-cp311-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.26+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| dsgrn-1.10.0-cp311-cp311-macosx_11_0_arm64.whl | CPython 3.11 | CPython 3.11 | macOS 11.0+ ARM64 | Details |
| dsgrn-1.10.0-cp311-cp311-macosx_10_9_x86_64.whl | CPython 3.11 | CPython 3.11 | macOS 10.9+ x86-64 | Details |
| dsgrn-1.10.0-cp310-cp310-win_amd64.whl | CPython 3.10 | CPython 3.10 | Windows x86-64 | Details |
| dsgrn-1.10.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.27+ x86-64, Linux glibc 2.28+ x86-64 | Details |
| dsgrn-1.10.0-cp310-cp310-manylinux_2_26_i686.manylinux_2_28_i686.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.26+ x86-32, Linux glibc 2.28+ x86-32 | Details |
| dsgrn-1.10.0-cp310-cp310-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.26+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| dsgrn-1.10.0-cp310-cp310-macosx_11_0_arm64.whl | CPython 3.10 | CPython 3.10 | macOS 11.0+ ARM64 | Details |
| dsgrn-1.10.0-cp310-cp310-macosx_10_9_x86_64.whl | CPython 3.10 | CPython 3.10 | macOS 10.9+ x86-64 | Details |
Total release size: 665.2 MB
Release files / dsgrn-1.10.0.tar.gz
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Transparency logRelease files / dsgrn-1.10.0-cp310-cp310-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl
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Transparency logRelease files / dsgrn-1.10.0-cp310-cp310-macosx_11_0_arm64.whl
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Transparency logRelease files / dsgrn-1.10.0-cp310-cp310-macosx_10_9_x86_64.whl
| Download URL | dsgrn-1.10.0-cp310-cp310-macosx_10_9_x86_64.whl |
|---|---|
| Size | 16.9 MB |
| Tags | CPython 3.10 macOS 10.9+ x86-64 |
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