DSSPparser
DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by dssp,also support the tansfrom between the PDB id and dssp format, hssp format and sequence.
Install
stabel verison
pip install DSSPparser
lastest version
pip install git+https://github.com/neolei/DSSPparser.git
Examples
parse dssp file to pandas.dataframe
from DSSPparser import parseDSSP
parser = parseDSSP('2GW9.dssp')
parser.parse()
pddict = parser.dictTodataframe()
Transform between the PDB format and dssp format
- Note: please install the DSSP software.
conda install -c salilab dssp
from DSSPparser import pdbToxssp_local
result = pdbToxssp("2GW9")
License
Released under the MIT license.
1 maintainer
Metadata
1 maintainer
Release files for DSSPparser 0.1.3
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| DSSPparser-0.1.3.tar.gz | 6.7 kB | Without provenance | Details for DSSPparser-0.1.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| DSSPparser-0.1.3-py3-none-any.whl | Python 3 | none | any | Details for DSSPparser-0.1.3-py3-none-any.whl |
Total release size: 14.6 kB
Release files / DSSPparser-0.1.3.tar.gz
| Download URL | DSSPparser-0.1.3.tar.gz |
|---|---|
| Size | 6.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/4.0.1 CPython/3.9.14
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Release files / DSSPparser-0.1.3-py3-none-any.whl
| Download URL | DSSPparser-0.1.3-py3-none-any.whl |
|---|---|
| Size | 7.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
cb8f37e7e27027b1133069fc6810fbd3de650c29df1bcef22bd6b489e8f0e355
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.14
|
Security for DSSPparser 0.1.3
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