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parse protein secondary structure; dssp file; DSSP api interface; transform PDB format to dssp format

Project description

# DSSPparser

[![PyPI - Version](https://img.shields.io/pypi/v/DSSPparser.svg?style=flat)](https://pypi.org/project/DSSPparser/) [![PyPI - Python Version](https://img.shields.io/pypi/pyversions/DSSPparser.svg)](https://pypi.org/project/DSSPparser/) [![GitHub - LICENSE](https://img.shields.io/github/license/neolei/DSSPparser.svg?style=flat)](./LICENSE.txt)

DSSPparser is easy to parse dssp file, and can transform PDB format file to dssp format file by [xssp](http://www.cmbi.ru.nl/xssp/api/),also support the tansfrom between the PDB id and dssp format, hssp format and sequence.

## Examples

parse dssp file to pandas.dataframe

`Python from DSSParser import parser parse_ = parseDSSP('2GW9.dssp') parse_.parse() pddict = parse_.dictTodataframe() `

Transform between the PDB format and dssp format

`Python from DSSPparser import pdbToxssp result = pdbToxssp("2GW9") `

## License

Released under the MIT license.

Project details


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0.12

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