Skip to main content

Converts EMBL- or GenBank-formatted flatfiles to submission checklists (i.e., tab-separated spreadsheets) for submission to ENA via the interactive Webin submission system

Project description


Build Status Build Status PyPI status PyPI pyversions PyPI version PyPI license

EMBL2checklists converts EMBL- or GenBank-formatted flat files to submission-ready checklists (i.e., tab-separated spreadsheets) for submission to ENA via the interactive Webin submission system.


  • Input: EMBL- or GenBank-formatted flatfile
  • Output: tab-separated spreadsheet ("checklist")
  • Prerequisites: Input flatfiles must have the DNA marker name (e.g., "matK", "ITS") as qualifier value for any of the defined key_features ("gene", "note", "product" or "standard_name").


On Linux / MacOS

Commandline Interface

$ EMBL2checklists_CLI \
    -i example/input/example_trnK_matK.embl \
    -o example/temp/example_trnK_matK.tsv \
    -c trnK_matK \
    -e no

GUI Interface

$ EMBL2checklists_GUI

On Windows

GUI Interface

Simply double-click the file EMBL2checklist_GUI.exe as generated during the installation (see below).


First, please be sure to have Python 2.7 installed on your system. Then:

To get the most recent stable version of EMBL2checklists, run:

$ pip2 install EMBL2checklists

Or, alternatively, if you want to get the latest development version of EMBL2checklists, run:

$ pip install git+


See for a list of recent changes to the software.

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
EMBL2checklists-0.6-py2-none-any.whl (19.2 kB) Copy SHA256 hash SHA256 Wheel py2
EMBL2checklists-0.6.tar.gz (16.3 kB) Copy SHA256 hash SHA256 Source None

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page