EXACT-Sync 0.0.39

A package to download images and annotations from the EXACT Server https://github.com/DeepMicroscopy/Exact

EXACT-Sync

Rest API sync with the EXACT Server https://github.com/ChristianMarzahl/Exact

Browsable-API

Example Notebooks

In the folder examples

Pip

pip install EXCAT-Sync

Tests

with a lot of implementation examples /exact_sync/v1/test

Basic features:

Connect to server

configuration = Configuration()
configuration.username = 'exact'
configuration.password = 'exact'
configuration.host = "http://127.0.0.1:8000"

client = ApiClient(configuration)

image_sets_api = ImageSetsApi(client)
annotations_api = AnnotationsApi(client)
annotation_types_api = AnnotationTypesApi(client)
images_api = ImagesApi(client)
product_api = ProductsApi(client)
team_api = TeamsApi(client)

Get image set information

image_sets = image_sets_api.list_image_sets(name="cluster_asthma_imageset")
image_sets

Upload image to image set

image_type = int(Image.ImageSourceTypes.DEFAULT)
image = images_api.create_image(file_path=target_file, image_type=image_type, image_set=image_set.id).results[0]

Donwload image from image set

images_api.download_image(id=image_id, target_path=image_path, original_image=True)

Download image annotations

annotations_api.list_annotations(pagination=False, async_req=True, image=image.id)