FFPopSim

License: GPL3
Author: Richard Neher, Fabio Zanini
Creation: 2012/09/12

Description

Genetic drift and draft

FFPopSim is a C++ and Python library to simulate large populations that are polymorphic at many loci. It allows for asexual and recombining populations and complex fitness functions, including pairwise and higher order epistasis. It is designed to study the effects of linked selection, the rare processes in large populations, and can be used to address a large variety of population genetics problems.

FFPopSim is easy to use via the Python interface and can be extended or modified both at the C++ or Python level.

Downloads

The official sources and releases are online at:

https://github.com/neherlab/ffpopsim

https://github.com/iosonofabio/ffpopsim

Docs

Documentation and examples are online at:

http://webdav.tuebingen.mpg.de/ffpopsim/

http://ffpopsim.readthedocs.io/en/latest/

(The latter only for the Python interface.)

Install

To install the library, read the INSTALL file. The two configuration files are:

Makefile
setup.py (for the Python extension)

Enjoy.

Metadata

Release files for FFPopSim 3.1.2

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for FFPopSim 3.1.2
File	Size	Uploaded
FFPopSim-3.1.2.tar.gz	116.0 kB	Nov 23, 2022	Details

Built distributions (wheels)

Table of built distributions (wheels) for FFPopSim 3.1.2
File	Interpreter	ABI	Platform	Reset
FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 9.1 MB Nov 23, 2022	CPython 3.11	CPython 3.11	Linux glibc 2.17+ x86-64	Details
FFPopSim-3.1.2-cp311-cp311-macosx_11_0_arm64.whl 398.7 kB Nov 23, 2022	CPython 3.11	CPython 3.11	macOS 11.0+ ARM64	Details
FFPopSim-3.1.2-cp311-cp311-macosx_10_9_x86_64.whl 1.5 MB Nov 23, 2022	CPython 3.11	CPython 3.11	macOS 10.9+ x86-64	Details
FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 9.1 MB Nov 23, 2022	CPython 3.10	CPython 3.10	Linux glibc 2.17+ x86-64	Details
FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl 398.7 kB Nov 23, 2022	CPython 3.10	CPython 3.10	macOS 11.0+ ARM64	Details
FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl 1.5 MB Nov 23, 2022	CPython 3.10	CPython 3.10	macOS 10.9+ x86-64	Details
FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 9.1 MB Nov 23, 2022	CPython 3.9	CPython 3.9	Linux glibc 2.17+ x86-64	Details
FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl 398.7 kB Nov 23, 2022	CPython 3.9	CPython 3.9	macOS 11.0+ ARM64	Details
FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl 1.5 MB Nov 23, 2022	CPython 3.9	CPython 3.9	macOS 10.9+ x86-64	Details
FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 9.1 MB Nov 23, 2022	CPython 3.8	CPython 3.8	Linux glibc 2.17+ x86-64	Details
FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl 399.4 kB Nov 23, 2022	CPython 3.8	CPython 3.8	macOS 11.0+ ARM64	Details
FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl 1.5 MB Nov 23, 2022	CPython 3.8	CPython 3.8	macOS 10.9+ x86-64	Details
FFPopSim-3.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 9.1 MB Nov 23, 2022	CPython 3.7	CPython 3.7 pymalloc	Linux glibc 2.17+ x86-64	Details
FFPopSim-3.1.2-cp37-cp37m-macosx_10_9_x86_64.whl 1.5 MB Nov 23, 2022	CPython 3.7	CPython 3.7 pymalloc	macOS 10.9+ x86-64	Details
FFPopSim-3.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 9.1 MB Nov 23, 2022	CPython 3.6	CPython 3.6 pymalloc	Linux glibc 2.17+ x86-64	Details
FFPopSim-3.1.2-cp36-cp36m-macosx_10_9_x86_64.whl 1.5 MB Nov 23, 2022	CPython 3.6	CPython 3.6 pymalloc	macOS 10.9+ x86-64	Details

Total release size: 64.9 MB

Release files / FFPopSim-3.1.2.tar.gz

Download URL	FFPopSim-3.1.2.tar.gz
Size	116.0 kB
Tags	Source
SHA-256 checksum How to use checksums	`5b68f237adbe8067a89db071de3b3587ac2b3e939e2f90ee0e2b0c09429febcf`
BLAKE2b-256 checksum How to use checksums	`8b43a92c53c7824d5c1afc0a38b612cf72718c7fbbab767d6b0f9f51618626b1`
Upload date	Nov 23, 2022
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Download URL	FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Size	9.1 MB
Tags	CPython 3.11 Linux glibc 2.17+ x86-64
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BLAKE2b-256 checksum How to use checksums	`8129de6d88d6dff643923849a82fd27394a0b62e24a9dd83ec6ed5941f1d88bd`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp311-cp311-macosx_11_0_arm64.whl

Download URL	FFPopSim-3.1.2-cp311-cp311-macosx_11_0_arm64.whl
Size	398.7 kB
Tags	CPython 3.11 macOS 11.0+ ARM64
SHA-256 checksum How to use checksums	`641d2d80d4e0bb8d9dae8410922f6b1e05bc5366912aba741b00c34e0d5cb3a9`
BLAKE2b-256 checksum How to use checksums	`deb9300dbb86cc2721c6acf1d597d4d13d533baf42978ef4bf51825f4e30f20b`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp311-cp311-macosx_10_9_x86_64.whl

Download URL	FFPopSim-3.1.2-cp311-cp311-macosx_10_9_x86_64.whl
Size	1.5 MB
Tags	CPython 3.11 macOS 10.9+ x86-64
SHA-256 checksum How to use checksums	`1695761c655fa84f39ac9ef22e8ae8680afc7ac82638a9ff8b0af9d304f5e51d`
BLAKE2b-256 checksum How to use checksums	`adab7ca26297aae00b8760865007b8bd1175b0ddb5c95f9c5eb9e22a149b3040`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Download URL	FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Size	9.1 MB
Tags	CPython 3.10 Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`8426b89dd24f1c3965e7cf696d527bd38be6ec5eae4a3ff3f65cb5fb8d671952`
BLAKE2b-256 checksum How to use checksums	`da21d2b28d9643463a25d862796550dfb8b2f4b577c3aaca60c4046f19cab674`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl

Download URL	FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl
Size	398.7 kB
Tags	CPython 3.10 macOS 11.0+ ARM64
SHA-256 checksum How to use checksums	`a510bb64dd0edbcfdcb2d9d7bb13b0cf81c87b144f57bd748e51503c3fde2ac5`
BLAKE2b-256 checksum How to use checksums	`2497008287474bb40ff99371375ac745dc6be54392f83e9996afb1a1d5854154`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl

Download URL	FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl
Size	1.5 MB
Tags	CPython 3.10 macOS 10.9+ x86-64
SHA-256 checksum How to use checksums	`2f749e145436961db96bfe5f1b04a69b7862cee38283ec9ad368bc8fd2487a13`
BLAKE2b-256 checksum How to use checksums	`ec29ff4b3257c1f6f2628ffb71ca95a1bba92b068fc4ff721171230bb7281c72`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Download URL	FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Size	9.1 MB
Tags	CPython 3.9 Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`1e7d34233d1c755678d8035cffc4d969efc9bc9367196239d136e496513223b1`
BLAKE2b-256 checksum How to use checksums	`6cf980f5c4956d31a86675fbd6389386415ae353a9106b5c06bd2468fe7badd8`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl

Download URL	FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl
Size	398.7 kB
Tags	CPython 3.9 macOS 11.0+ ARM64
SHA-256 checksum How to use checksums	`cc94bffed14a9c3a0c105b8af94f7742ed76db8e1b0cde319b38339dbe736dba`
BLAKE2b-256 checksum How to use checksums	`da6fefd671d23e606bc26c94fbef1882e7fe3df39c0bcda9b29ff0d6eac444cd`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl

Download URL	FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl
Size	1.5 MB
Tags	CPython 3.9 macOS 10.9+ x86-64
SHA-256 checksum How to use checksums	`31986846a00f8380fdeacf1d6816d3b682b55a558b3eef6927266a60960e574c`
BLAKE2b-256 checksum How to use checksums	`9233868c93d15bb071a12c83f0576441ffd72f07818af893ad49d3d64d58e119`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Download URL	FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Size	9.1 MB
Tags	CPython 3.8 Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`c607c7d0ff07e085b6e797ef987c42a73ec3438a72e239e2b94fe5f35340da01`
BLAKE2b-256 checksum How to use checksums	`857a14ba5fff474ca1ff42c92be756ebd61597dc0209bb7c3e17359335bbb850`
Upload date	Nov 23, 2022
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl

Download URL	FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl
Size	399.4 kB
Tags	CPython 3.8 macOS 11.0+ ARM64
SHA-256 checksum How to use checksums	`d30598402d435ef976986a2e58f8346c02e39d3238e47d0e388186f999acfbe6`
BLAKE2b-256 checksum How to use checksums	`acd7e11df23b6f157a2f0107fc3f8b52ad4f77ded471b4c19d27a1b6bf22e625`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl

Download URL	FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl
Size	1.5 MB
Tags	CPython 3.8 macOS 10.9+ x86-64
SHA-256 checksum How to use checksums	`9c4267df3ba4807c678b459671a350ad1b3928aadf4ea9e100d6a762db2c4248`
BLAKE2b-256 checksum How to use checksums	`5b2e570cd01bb4c3a9efca26e9c0e4a8706488c6f56b4090a8dbf44ad610007e`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Download URL	FFPopSim-3.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Size	9.1 MB
Tags	CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`866e43b527bdad27c954b79af5767f0d0940358fa80b5e70413f9e935777e1c7`
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Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp37-cp37m-macosx_10_9_x86_64.whl

Download URL	FFPopSim-3.1.2-cp37-cp37m-macosx_10_9_x86_64.whl
Size	1.5 MB
Tags	CPython 3.7 CPython 3.7 pymalloc macOS 10.9+ x86-64
SHA-256 checksum How to use checksums	`35e5dd198a46696bc355003176a6eb3766958e05ad8c66bd9f7e09ba3239d758`
BLAKE2b-256 checksum How to use checksums	`035aa507bf8ac5e027f4d1c4adb0c7f61d5072578d6f97fe46d498b037fa6d32`
Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Download URL	FFPopSim-3.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Size	9.1 MB
Tags	CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`f52532085aa7d21c71433a2259192f0a7b09bd27c704bf02a49f2f9549828253`
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Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`

Release files / FFPopSim-3.1.2-cp36-cp36m-macosx_10_9_x86_64.whl

Download URL	FFPopSim-3.1.2-cp36-cp36m-macosx_10_9_x86_64.whl
Size	1.5 MB
Tags	CPython 3.6 CPython 3.6 pymalloc macOS 10.9+ x86-64
SHA-256 checksum How to use checksums	`4368fedd7438e5882175cf4c020df201b45be3450cead3920fbba2e75df70f70`
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Upload date	Nov 23, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.15`