FFPopSim

Library to simulate evolution of large populations that are polymorphic at many loci.

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Maintainers

iosonofabio ivan_aksamentov neherlab_bot rneher

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Project description

License: GPL3
Author: Richard Neher, Fabio Zanini
Creation: 2012/09/12

Description

Genetic drift and draft

FFPopSim is a C++ and Python library to simulate large populations that are polymorphic at many loci. It allows for asexual and recombining populations and complex fitness functions, including pairwise and higher order epistasis. It is designed to study the effects of linked selection, the rare processes in large populations, and can be used to address a large variety of population genetics problems.

FFPopSim is easy to use via the Python interface and can be extended or modified both at the C++ or Python level.

Downloads

The official sources and releases are online at:

https://github.com/neherlab/ffpopsim

https://github.com/iosonofabio/ffpopsim

Docs

Documentation and examples are online at:

http://webdav.tuebingen.mpg.de/ffpopsim/

http://ffpopsim.readthedocs.io/en/latest/

(The latter only for the Python interface.)

Install

To install the library, read the INSTALL file. The two configuration files are:

Makefile
setup.py (for the Python extension)

Enjoy.

Project details

These details have been verified by PyPI

Maintainers

iosonofabio ivan_aksamentov neherlab_bot rneher

These details have not been verified by PyPI

Project links

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Release history Release notifications | RSS feed

This version

3.1.2

Nov 23, 2022

3.1.1

Nov 22, 2022

3.1.0

Nov 22, 2022

3.0.0

Nov 22, 2022

2.0

Jan 15, 2014

Download files

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Source Distribution

FFPopSim-3.1.2.tar.gz (116.0 kB view hashes)

Uploaded Nov 23, 2022 Source

Built Distributions

FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.11 manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp311-cp311-macosx_11_0_arm64.whl (398.7 kB view hashes)

Uploaded Nov 23, 2022 CPython 3.11 macOS 11.0+ ARM64

FFPopSim-3.1.2-cp311-cp311-macosx_10_9_x86_64.whl (1.5 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.11 macOS 10.9+ x86-64

FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.10 manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl (398.7 kB view hashes)

Uploaded Nov 23, 2022 CPython 3.10 macOS 11.0+ ARM64

FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl (1.5 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.10 macOS 10.9+ x86-64

FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.9 manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl (398.7 kB view hashes)

Uploaded Nov 23, 2022 CPython 3.9 macOS 11.0+ ARM64

FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl (1.5 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.9 macOS 10.9+ x86-64

FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.8 manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl (399.4 kB view hashes)

Uploaded Nov 23, 2022 CPython 3.8 macOS 11.0+ ARM64

FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl (1.5 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.8 macOS 10.9+ x86-64

FFPopSim-3.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.7m manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (1.5 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.7m macOS 10.9+ x86-64

FFPopSim-3.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.6m manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp36-cp36m-macosx_10_9_x86_64.whl (1.5 MB view hashes)

Uploaded Nov 23, 2022 CPython 3.6m macOS 10.9+ x86-64

Hashes for FFPopSim-3.1.2.tar.gz

Hashes for FFPopSim-3.1.2.tar.gz
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Hashes for FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp311-cp311-macosx_11_0_arm64.whl
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Hashes for FFPopSim-3.1.2-cp311-cp311-macosx_10_9_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl

Hashes for FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl
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Hashes for FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl

Hashes for FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl

Hashes for FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl
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Hashes for FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl

Hashes for FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl

Hashes for FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl
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Hashes for FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl

Hashes for FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp37-cp37m-macosx_10_9_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for FFPopSim-3.1.2-cp36-cp36m-macosx_10_9_x86_64.whl
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