Flow Cytometry Toolkit
Project description
FlowKit
Intuitive Python framework for flow cytometry analysis and visualization, including GatingML support.
Requirements
FlowKit supports Python version 3.6 or above. All dependencies are installable via pip, and include:
- flowio >= 0.9.3
- flowutils >= 0.6.8
- numpy >= 0.15
- scipy >= 1.0
- pandas >= 0.19
- matplotlib >= 3.0
- seaborn >= 0.9
- bokeh >= 1.0
- lxml >= 4.2
- anytree >= 2.4
Installation
From PyPI
pip install flowkit
From source
git clone https://github.com/whitews/flowkit
cd flowkit
python setup.py install
Usage
See the notebook tutorial.
Project details
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