Flow Cytometry Standard Utilities
Project description
FlowUtils
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
FlowUtils is part of a suite of Python libraries for analyzing flow cytometry data. It was developed as an extension to the light-weight FlowIO library. FlowIO reads and writes Flow Cytometry Standard (FCS) files, and has zero dependencies. For higher level interaction with flow cytometry data, including GatingML & FlowJo 10 support, see the related FlowKit project.
Installation
FlowUtils implements several transformation functions as C extensions for increased performance on large arrays of FCS event data. NumPy is required to compile these C extensions prior to installing FlowUtils.
From PyPI
FlowUtils is available via the pip
command. However, NumPy must be installed prior in order to
compile the C extensions.
pip install numpy
pip install flowutils
From GitHub source code
pip install numpy
git clone https://github.com/whitews/flowutils
cd flowutils
python setup.py install
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