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DNase I seq QC pipeline

Project Description

GCAP is a python module for wrapping different tools to quality control DNase-seq and other open chromatin sequencing data.

GCAP is easy to start

GCAP -i "test_pair2.fastq,test_pair1.fastq;test_pair2.fastq,test_pair1.fastq" -n test -o test -s hg19 --pe --threads 18

We suggest using virtualenv to avoid python version library conflicts.

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
GCAP-1.1-20140805.tar.gz (24.8 kB) Copy SHA256 Checksum SHA256 Source Aug 5, 2014

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