Skip to main content
Join the official 2019 Python Developers SurveyStart the survey!

DNase I seq QC pipeline

Project description

GCAP is a python module for wrapping different tools to quality control DNase-seq and other open chromatin sequencing data.

GCAP is easy to start

GCAP -i "test_pair2.fastq,test_pair1.fastq;test_pair2.fastq,test_pair1.fastq" -n test -o test -s hg19 --pe --threads 18

We suggest using virtualenv to avoid python version library conflicts.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for GCAP, version 1.1-20140805
Filename, size File type Python version Upload date Hashes
Filename, size GCAP-1.1-20140805.tar.gz (24.8 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page