A library for finding the nearest gene to a genomic location
Project description
`sh pip3 install genelocator genelocator GRCh37 gencode32 codinglike-genes chr19 290123 # => 19 281040 291403 ENSG00000141934.10_5 PLPP2 `
`python3 from genelocator import get_genelocator gl = get_genelocator(grch_build=38, gencode_version=32, only_codinglike_genetypes=True) gene = gl.at('chr19', 101000) # => [{'chrom': '19', 'start': 107104, 'end': 117102, 'ensg': 'ENSG00000176695.8', 'symbol': 'OR4F17'}] `
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
GeneLocator-1.0.2.tar.gz
(5.0 MB
view hashes)
Built Distribution
Close
Hashes for GeneLocator-1.0.2-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 2cb99c0b79283a3503320f62894e4048ba1a35fd3d1e64517bfa38153939d6a2 |
|
MD5 | c856449dad57e69faca92e244d31f536 |
|
BLAKE2b-256 | 1f30ead0cc4bfdbfd9b66d3c8fe4db02c4dd7cbaa436c3b940d09f71d0e2c7aa |