Hierarchical Manifold Approximation and Projection for Single Cell Data
Project description
HMAP: Hierarchical Manifold Approximation and Projection
HMAP develop a hierarchical deep generative topographic mapping algorithm to realize the recovery of both global and local manifolds underlying single-cell data.
Installation
- Create a virtual environment and activate it
conda create -n HMAP python=3.10 scipy numpy pandas scikit-learn && conda activate HMAP
- Install PyTorch following the official instruction.
pip3 install torch torchvision --index-url https://download.pytorch.org/whl/cu126
- Install HMAP
pip3 install HMAP-tool
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
hmap_tool-1.0.5.tar.gz
(21.0 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
hmap_tool-1.0.5-py3-none-any.whl
(22.4 kB
view details)
File details
Details for the file hmap_tool-1.0.5.tar.gz.
File metadata
- Download URL: hmap_tool-1.0.5.tar.gz
- Upload date:
- Size: 21.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.10.18
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
3a9c7ab082030715bf367563a6cb247ec937a3145e07224d136514471f7b3618
|
|
| MD5 |
979e21d8c45afb70ad5bf948d1d764fe
|
|
| BLAKE2b-256 |
bb85ae826eb51ec9b2cb372b5e45df3c62bc7ecf76621e0e0737468b223f294e
|
File details
Details for the file hmap_tool-1.0.5-py3-none-any.whl.
File metadata
- Download URL: hmap_tool-1.0.5-py3-none-any.whl
- Upload date:
- Size: 22.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.10.18
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
2195b065b8c488dbc21ebf6a961b598cc4e576488300c9e861c0e8e609cb83bc
|
|
| MD5 |
17ab68c5543c16454cd3fb25b6124299
|
|
| BLAKE2b-256 |
42ad986c85e80cfac66071c7f20c39fd3ec84406941d1f0ad9db770b854082c8
|
