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Biological image analysis pipelines compiler

Project description

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Image Pipe

Pipeline building solution for 4D biological microscopy


This project is still in development. Initially started as a tool for Ruan, Zhou et al, Nature 2017, this pipeline has since grown to allow arbitrary pipeline construction based on a set of primitive functions and abstractions (pipe, tiling, per-segment processing, etc…).

This project is currently in alpha development, hence poorly documented, sparsely tested and prone to rapid changes.

Basic installation:

> pip install imagepipe


> pip install git+

The documentation is available on readthedocs.

Project is housed at GitHub. For any issues please refer to GitHub issue tracker.

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ImagePipe-0.2.0rc1-py2-none-any.whl (39.6 kB) Copy SHA256 hash SHA256 Wheel py2

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