Biological image analysis pipelines compiler
Pipeline building solution for 4D biological microscopy
This project is still in development. Initially started as a tool for Ruan, Zhou et al, Nature 2017, this pipeline has since grown to allow arbitrary pipeline construction based on a set of primitive functions and abstractions (pipe, tiling, per-segment processing, etc…).
This project is currently in alpha development, hence poorly documented, sparsely tested and prone to rapid changes.
> pip install imagepipe
> pip install git+https://github.com/chiffa/Image_pipe.git
The documentation is available on readthedocs.
Project is housed at GitHub. For any issues please refer to GitHub issue tracker.