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KDEpy

About

This Python 3.5+ package implements various kernel density estimators (KDE). Three algorithms are implemented through the same API: NaiveKDE, TreeKDE and FFTKDE. The class FFTKDE outperforms other popular implementations, see the comparison page.

Plot

The code generating the above graph is found in examples.py.

Installation

KDEpy is available through PyPI, and may be installed using pip:

pip install KDEpy

If you have trouble on Ubuntu, try running sudo apt install libpython3.X-dev, where 3.X is your Python version.

Example code and documentation

Below is an example using NumPy as np and scipy.stats.norm to plot a density estimate. From the code below, it should be clear how to set the kernel, bandwidth (variance of the kernel) and weights. See the documentation for more examples.

from KDEpy import FFTKDE
data = norm(loc=0, scale=1).rvs(2**3)
estimator = FFTKDE(kernel='gaussian', bw='silverman')
x, y = estimator.fit(data, weights=None).evaluate()
plt.plot(x, y, label='KDE estimate')

Plot

The package consists of three algorithms. Here's a brief explanation:

NaiveKDE - A naive computation. Supports d-dimensional data, variable bandwidth, weighted data and many kernel functions. Very slow on large data sets.
TreeKDE - A tree-based computation. Supports the same features as the naive algorithm, but is faster at the expense of small inaccuracy when using a kernel without finite support. Good for evaluation on non-uniform, arbitrary grids.
FFTKDE - A very fast convolution-based computation. Supports weighted d-dimensional data and many kernels, but not variable bandwidth. Must be evaluated on an equidistant grid, the finer the grid the higher the accuracy. Data points may not be outside of the grid.

Issues and contributing

Issues

If you are having trouble using the package, please let me know by creating an Issue on GitHub and I'll get back to you.

Contributing

Whatever your mathematical and Python background is, you are very welcome to contribute to KDEpy. To contribute, fork the project, create a branch and submit and Pull Request. Please follow these guidelines:

Import as few external dependencies as possible.
Use test driven development, have tests and docs for every method.
Cite literature and implement recent methods.
Unless it's a bottleneck computation, readability trumps speed.
Employ object orientation, but resist the temptation to implement many methods -- stick to the basics.
Follow PEP8.

Release files for KDEpy 1.0.2

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Files added late

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Source distribution (sdist)

Source distribution for KDEpy 1.0.2
File	Size	Uploaded
KDEpy-1.0.2.tar.gz	136.7 kB	Jul 20, 2019	Details

Built distributions (wheels)

Table of built distributions (wheels) for KDEpy 1.0.2
File	Interpreter	ABI	Platform	Reset
KDEpy-1.0.2-cp38-cp38-manylinux2010_x86_64.whl 419.9 kB Mar 9, 2020	CPython 3.8	CPython 3.8	Linux glibc 2.12+ x86-64	Details
KDEpy-1.0.2-cp38-cp38-manylinux1_x86_64.whl 419.9 kB Mar 9, 2020	CPython 3.8	CPython 3.8	Linux glibc 2.5+ x86-64	Details
KDEpy-1.0.2-cp37-cp37m-win_amd64.whl 110.1 kB Jul 20, 2019	CPython 3.7	CPython 3.7 pymalloc	Windows x86-64	Details
KDEpy-1.0.2-cp37-cp37m-win32.whl 97.1 kB Jul 20, 2019	CPython 3.7	CPython 3.7 pymalloc	Windows x86-32	Details
KDEpy-1.0.2-cp37-cp37m-manylinux2010_x86_64.whl 383.6 kB Nov 18, 2019	CPython 3.7	CPython 3.7 pymalloc	Linux glibc 2.12+ x86-64	Details
KDEpy-1.0.2-cp37-cp37m-manylinux1_x86_64.whl 383.6 kB Nov 18, 2019	CPython 3.7	CPython 3.7 pymalloc	Linux glibc 2.5+ x86-64	Details
KDEpy-1.0.2-cp37-cp37m-macosx_10_6_intel.whl 193.3 kB Nov 18, 2019	CPython 3.7	CPython 3.7 pymalloc	macOS 10.6+ Intel (x86-64, i386)	Details
KDEpy-1.0.2-cp36-cp36m-win_amd64.whl 110.1 kB Jul 20, 2019	CPython 3.6	CPython 3.6 pymalloc	Windows x86-64	Details
KDEpy-1.0.2-cp36-cp36m-win32.whl 97.2 kB Jul 20, 2019	CPython 3.6	CPython 3.6 pymalloc	Windows x86-32	Details
KDEpy-1.0.2-cp36-cp36m-manylinux2010_x86_64.whl 384.0 kB Nov 18, 2019	CPython 3.6	CPython 3.6 pymalloc	Linux glibc 2.12+ x86-64	Details
KDEpy-1.0.2-cp36-cp36m-manylinux1_x86_64.whl 384.0 kB Nov 18, 2019	CPython 3.6	CPython 3.6 pymalloc	Linux glibc 2.5+ x86-64	Details
KDEpy-1.0.2-cp36-cp36m-macosx_10_6_intel.whl 192.9 kB Nov 18, 2019	CPython 3.6	CPython 3.6 pymalloc	macOS 10.6+ Intel (x86-64, i386)	Details
KDEpy-1.0.2-cp35-cp35m-win_amd64.whl 109.8 kB Jul 20, 2019	CPython 3.5	CPython 3.5 pymalloc	Windows x86-64	Details
KDEpy-1.0.2-cp35-cp35m-win32.whl 96.6 kB Jul 20, 2019	CPython 3.5	CPython 3.5 pymalloc	Windows x86-32	Details
KDEpy-1.0.2-cp35-cp35m-manylinux2010_x86_64.whl 379.0 kB Nov 18, 2019	CPython 3.5	CPython 3.5 pymalloc	Linux glibc 2.12+ x86-64	Details
KDEpy-1.0.2-cp35-cp35m-manylinux1_x86_64.whl 379.0 kB Nov 18, 2019	CPython 3.5	CPython 3.5 pymalloc	Linux glibc 2.5+ x86-64	Details
KDEpy-1.0.2-cp35-cp35m-macosx_10_6_intel.whl 190.7 kB Nov 18, 2019	CPython 3.5	CPython 3.5 pymalloc	macOS 10.6+ Intel (x86-64, i386)	Details

Total release size: 4.5 MB

Release files / KDEpy-1.0.2.tar.gz

Download URL	KDEpy-1.0.2.tar.gz
Size	136.7 kB
Tags	Source
SHA-256 checksum How to use checksums	`6ddeae3f5e20d195b4c60f3416dd8fec08838e16a6f3c8dc857a1fc28f0e58a9`
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Size	419.9 kB
Tags	CPython 3.8 Linux glibc 2.12+ x86-64
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Size	419.9 kB
Tags	CPython 3.8 Linux glibc 2.5+ x86-64
SHA-256 checksum How to use checksums	`eb18675e6cd415cde398e50d08248274a8832c69323c8c0556fc6db7a618df7a`
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Release files / KDEpy-1.0.2-cp37-cp37m-win_amd64.whl

Download URL	KDEpy-1.0.2-cp37-cp37m-win_amd64.whl
Size	110.1 kB
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Release files / KDEpy-1.0.2-cp37-cp37m-win32.whl

Download URL	KDEpy-1.0.2-cp37-cp37m-win32.whl
Size	97.1 kB
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Size	383.6 kB
Tags	CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.12+ x86-64
SHA-256 checksum How to use checksums	`39ec7ee0b792e51e7a4bf203be744ccd0b0c665b838a2233e52034d7861a9905`
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Size	383.6 kB
Tags	CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.5+ x86-64
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Size	193.3 kB
Tags	CPython 3.7 CPython 3.7 pymalloc macOS 10.6+ Intel (x86-64, i386)
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Download URL	KDEpy-1.0.2-cp36-cp36m-win_amd64.whl
Size	110.1 kB
Tags	CPython 3.6 CPython 3.6 pymalloc Windows x86-64
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Release files / KDEpy-1.0.2-cp36-cp36m-win32.whl

Download URL	KDEpy-1.0.2-cp36-cp36m-win32.whl
Size	97.2 kB
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Size	384.0 kB
Tags	CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.12+ x86-64
SHA-256 checksum How to use checksums	`21a0540f9b7a19491afaf8c4795068a358603c748e1fb584b0c8c60d1ca0abc5`
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Size	384.0 kB
Tags	CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.5+ x86-64
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Size	192.9 kB
Tags	CPython 3.6 CPython 3.6 pymalloc macOS 10.6+ Intel (x86-64, i386)
SHA-256 checksum How to use checksums	`e52ba340882419e59339ffd236bc92ff8acb86bfc6cd244296ee52f6335cfb9a`
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Size	109.8 kB
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Download URL	KDEpy-1.0.2-cp35-cp35m-win32.whl
Size	96.6 kB
Tags	CPython 3.5 CPython 3.5 pymalloc Windows x86-32
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Size	379.0 kB
Tags	CPython 3.5 CPython 3.5 pymalloc Linux glibc 2.12+ x86-64
SHA-256 checksum How to use checksums	`e3a8822a2b88b3e8e41a92ba1a03b1d3e7ead36fa1b46ef8362a1c514aa84028`
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Size	379.0 kB
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1.1.9

Feb 29, 2024 26 release files

1.1.8

Oct 9, 2023 26 release files

1.1.7

Sep 21, 2023 13 release files

1.1.6

Sep 21, 2023 13 release files

1.1.5

Jul 26, 2023 29 release files

1.1.4

Jul 12, 2023 29 release files

1.1.3

May 23, 2023 29 release files

1.1.2

May 7, 2023 28 release files

1.1.1

Mar 18, 2023 35 release files

1.1.0

May 26, 2021 66 release files

1.0.11

May 19, 2021 28 release files

1.0.10

Oct 31, 2020 21 release files

1.0.9

Oct 31, 2020 15 release files

1.0.8

Oct 31, 2020 15 release files

1.0.7

Oct 28, 2020 15 release files

1.0.6

Oct 27, 2020 15 release files

1.0.5

May 16, 2020 21 release files

1.0.4

May 16, 2020 9 release files

1.0.3

Mar 19, 2020 15 release files

This release

1.0.2 This release

Jul 20, 2019 18 release files

0.6.11

Feb 23, 2019 7 release files

0.6.10

Feb 23, 2019 1 release file

0.6.9

Nov 23, 2018 10 release files

0.6

Sep 20, 2018 13 release files

0.5.6

Aug 29, 2018 11 release files

0.5.5

Aug 27, 2018 2 release files

0.5.4

Aug 26, 2018 1 release file

0.5.3

Aug 26, 2018 1 release file

0.5.2

Aug 26, 2018 1 release file

0.5.1

Aug 26, 2018 1 release file

0.5

Aug 25, 2018 1 release file

0.4

Aug 19, 2018 1 release file

0.3

Aug 8, 2018 1 release file

0.2

Jul 28, 2018 2 release files

0.1

Apr 1, 2018 1 release file

KDEpy 1.0.2

KDEpy

About

Installation

Example code and documentation

Issues and contributing

Issues

Contributing

Project links

Key dates

1 maintainer

Credits

License

Classifiers

Release files for KDEpy 1.0.2

Files added late

Source distribution (sdist)

Built distributions (wheels)

Release files / KDEpy-1.0.2.tar.gz

Release files / KDEpy-1.0.2-cp38-cp38-manylinux2010_x86_64.whl

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Release files / KDEpy-1.0.2-cp38-cp38-manylinux1_x86_64.whl

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Release files / KDEpy-1.0.2-cp37-cp37m-win_amd64.whl

Release files / KDEpy-1.0.2-cp37-cp37m-win32.whl

Release files / KDEpy-1.0.2-cp37-cp37m-manylinux2010_x86_64.whl

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Release files / KDEpy-1.0.2-cp37-cp37m-manylinux1_x86_64.whl

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Release files / KDEpy-1.0.2-cp37-cp37m-macosx_10_6_intel.whl

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Release files / KDEpy-1.0.2-cp36-cp36m-win_amd64.whl

Release files / KDEpy-1.0.2-cp36-cp36m-win32.whl

Release files / KDEpy-1.0.2-cp36-cp36m-manylinux2010_x86_64.whl

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Release files / KDEpy-1.0.2-cp36-cp36m-manylinux1_x86_64.whl

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Release files / KDEpy-1.0.2-cp36-cp36m-macosx_10_6_intel.whl

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Release files / KDEpy-1.0.2-cp35-cp35m-win_amd64.whl

Release files / KDEpy-1.0.2-cp35-cp35m-win32.whl

Release files / KDEpy-1.0.2-cp35-cp35m-manylinux2010_x86_64.whl

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Release files / KDEpy-1.0.2-cp35-cp35m-manylinux1_x86_64.whl

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Release files / KDEpy-1.0.2-cp35-cp35m-macosx_10_6_intel.whl

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