LCS-Algorithms 0.1.3

A collection of LCS algorithms in Python

LCS Algorithms Library

A Python library implementing multiple algorithms for computing the Longest Common Subsequence (LCS) between sequences (strings), including multi-sequence LCS.

Features

• Dynamic Programming LCS
  • lcsdp(sequence1, sequence2) — Finds the LCS of two sequences using dynamic programming.
• Multiple Sequence LCS (Dynamic Programming)
  • mlcsdp(sequences) — Finds the LCS among multiple sequences using dynamic programming.
• Dominant Point Approach
  • mlcsdpa(sequences, Sigma) — Finds the multi-sequence LCS using the dominant point approach.
• Parallel Algorithm
  • RAA(sequences, Sigma) — Parallel multi-sequence LCS computation.
• Redundancy Reduced Dominant Point Approach
  • rrmlcs(sequences, Sigma) — Optimized multi-sequence LCS using redundancy reduction.
• Pairwise Solution (1997)
  • TA(sequences) — Pairwise multi-sequence LCS based on a 1997 published method.
• Tournament Based Approach
  • TBA(s1, s2) — Tournament method for LCS of two sequences.

Installation

pip install lcs

Usage

from lcs import lcsdp, mlcsdp, mlcsdpa, RAA, rrmlcs, TA, TBA

# Example: LCS of two sequences
s1 = "AGGTAB"
s2 = "GXTXAYB"
print(lcsdp(s1, s2))

# Example: Multiple sequences
sequences = ["AGGTAB", "GXTXAYB", "GTAB"]
print(mlcsdp(sequences))

2. mlcsdp(sequences)

Dynamic Programming-based Multiple Sequence LCS.

Example:

from lcs_algorithms import mlcsdp
seqs = ["ABCBDAB", "BDCAB", "BCAB"]
result = mlcsdp(seqs)
print(result)  # Output: "BCAB"

2. mlcsdp(sequences)

Dynamic Programming-based Multiple Sequence LCS.

Example:

from lcs_algorithms import mlcsdp
seqs = ["ABCBDAB", "BDCAB", "BCAB"]
result = mlcsdp(seqs)
print(result)  # Output: "BCAB"

2. mlcsdp(sequences)

Dynamic Programming-based Multiple Sequence LCS.

Example:

from lcs_algorithms import mlcsdp
seqs = ["ABCBDAB", "BDCAB", "BCAB"]
result = mlcsdp(seqs)
print(result)  # Output: "BCAB"

3. mlcsdpa(sequences, Sigma)

Dominant Point Approach for multiple sequence LCS. Sigma is the alphabet set of all possible characters in the sequences.

Example:

from lcs_algorithms import mlcsdpa
Sigma = {'A', 'B', 'C', 'D'}
seqs = ["ABCBDAB", "BDCAB", "BCAB"]
result = mlcsdpa(seqs, Sigma)
print(result)

4. RAA(sequences, Sigma)

Parallel Algorithm for multiple sequence LCS computation.

Example:

from lcs_algorithms import RAA
Sigma = {'A', 'B', 'C', 'D'}
seqs = ["ABCBDAB", "BDCAB", "BCAB"]
result = RAA(seqs, Sigma)
print(result)

5. rrmlcs(sequences, Sigma)

Redundancy-Reduced Dominant Point based algorithm.

Example:

from lcs_algorithms import rrmlcs
Sigma = {'A', 'B', 'C', 'D'}
seqs = ["ABCBDAB", "BDCAB", "BCAB"]
result = rrmlcs(seqs, Sigma)
print(result)

6. TA(sequences)

Pairwise LCS Solution (1997 algorithm).

Example:

from lcs_algorithms import TA
seqs = ["ABCBDAB", "BDCAB"]
result = TA(seqs)
print(result)

7. TBA(s1, s2)

Tournament-Based Algorithm for LCS of two sequences.

Example:

from lcs_algorithms import TBA
result = TBA("ABCBDAB", "BDCAB")
print(result)

Installation

You can install via:

pip install lcs_algorithms

or you can clone and install it via:

git clone https://github.com/zeshanalvi/lcs_algorithms.git
cd lcs_algorithms
pip install .

Parameters

• sequence1, sequence2, s1, s2: Strings representing sequences.
• sequences: List of strings (multiple sequences).
• Sigma: Set of symbols (alphabet) used for dominant point and parallel algorithms.

License

This project is licensed under the MIT License.