LogicTreeETC 0.1.1

A package for easily creating publication ready logic trees

LogicTreeETC

Flexible, publication-ready logic trees, arrow connectors, and annotated diagrams - all in Python.

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Overview

LogicTreeETC is a Python package built on matplotlib for creating structured visual diagrams using logic boxes, stylized multi-segment arrows, and feature-detected anchors from underlying images via OpenCV. It enables clean, programmatic layouts for flowcharts, decision trees, image annotations, and more.

The package includes:

• LogicTree: A canvas manager for diagram elements and titles
• ArrowETC: A highly customizable arrow-drawing engine with explicit path control
• VectorDetector: A utility for detecting and labeling image vertices using OpenCV

Together, these tools help you build annotated, reusable diagrams for scientific or analytical workflows.

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Installation

Install from PyPI:

pip install logictreeetc

Upgrade to the latest version:

pip install --upgrade logictreeetc

Then import the tools:

from logictree import ArrowETC, LogicTree, VectorDetector

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Why Use LogicTreeETC?

Matplotlib's default arrows are inflexible and opaque. LogicTreeETC is designed for users who need:

• Explicit vertex control of arrows
• Clean logic box layouts with flexible styling
• Integration with images for analytical or anatomical diagrams
• Full access to metadata (segment angles, vertices, offsets) for debugging or alignment

Highlights

• Precise geometry control
  Define the explicit path of your arrow in data coordinates, whether straight, segmented, or curved. Access arrow metadata (e.g., the coordinates of every vertex, the angles each line segment makes with the positive x-axis, etc) without having to manually convert between pixel and data spaces like when using matplotlib's FancyArrow and FancyArrowPatch.

• Seamless box-arrow integration
  Attach arrows to any edge or corner of a LogicBox using sideA, sideB, and pixel offsets.

• Bezier curves and elbow routing
  Use preset or custom Bezier styles for natural curves, or route segmented arrows around obstacles and between misaligned elements.

• Built-in image feature detection
  Use VectorDetector to automatically locate keypoints in diagrams and images, then label and link them programmatically.

• Pixel-perfect arrow widths
  All arrow geometry is computed in pixel space, ensuring consistent widths regardless of axis scale or skew.

• LaTeX + publication-ready styles
  Full support for LaTeX typesetting, true-to-theme dark mode, and high-DPI figure export without extra configuration.

• Modular and extensible
  Each component (logic tree, arrows, feature detection) is usable independently or together - no lock-in or boilerplate.

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Coordinate Scaling Notice

The ArrowETC class requires the final aspect ratio of your matplotlib.axes.Axes object to compute arrow geometry correctly. Always call set_xlim() and set_ylim() before drawing arrows. Otherwise, the rendered arrows may appear skewed.

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Examples

Decision Tree for Analytical Filtering

A logic tree representing filtering steps in a dummy non-targeted analysis dataset.

Code: examples/decision_tree-NTA-Example.py

Features:

• Custom box styling and LaTeX text
• Straight and bifurcating arrows with labeled branches
• Optional text rotation

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Annotated Nephron Diagram with Auto-Detected Features

This example combines a background image, automatic feature detection, and curved arrows.

Code: examples/anatomical_diagram-nephron-Example.py

Features:

• Automatic vertex detection via VectorDetector

• User-labeled vertices for later access

• Curved arrows with fine-tuned styling and proportional arrowheads

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Normalized Blackbody Spectrum

Demonstrates the normalized blackbody spectrum at 5 temperatures, highlighting Wien's law and the ultraviolet catastrophe.

Features:

• Compatible with scientific plots
• Arrow rendering is robust to skewed aspect ratios
• Optional heads at both ends of arrows
• Preset styles like colormode="dark" save time

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Pedagogy: Showing the Product Rule

Illustrates term-by-term application of the product rule in differentiation.

Code: examples/information_flow-calculus-Example.py

Features:

• Explicit font color control
• Multi-segment arrows with arbitrary angles

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Custom Arrows with ArrowETC

See examples/example_arrows.py for all examples below.

Basic arrow with head

Multi-segment arrow with head

Obtuse angle arrow

Acute angle arrow

Complex multi-segmented arrow

Basic Bezier arrow

Complex Bezier arrow

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Font Installation (Times New Roman)

If Times New Roman is missing from your system, install it manually:

# Linux
mkdir -p ~/.local/share/fonts
cp logictree/fonts/Times\ New\ Roman.ttf ~/.local/share/fonts/
fc-cache -fv

On Windows or macOS, open:

logictree/fonts/Times New Roman.ttf

Then click Install.

To verify installation:

fc-list | grep -i times

If matplotlib cannot find the font:

rm -rf ~/.cache/matplotlib

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LaTeX Rendering (Optional)

Enable LaTeX rendering with use_tex_rendering=True when calling LogicTree.add_box().

Windows

• Install MiKTeX

macOS

• Install MacTeX

Linux

sudo apt install texlive-latex-base texlive-fonts-recommended texlive-fonts-extra texlive-latex-extra dvipng

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Development

This project uses the following tools for code quality and security:

• Ruff: for fast linting and auto-formatting.
• mypy: for static type checking.
• Bandit: for security scanning.
• GitHub Actions CI: runs tests, type checks, linting, and security checks on every push.
• Dependabot: automatically checks for dependency updates.

See the .github/workflows/ directory for CI configurations.

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License

This project is licensed under CC0 (public domain). See the LICENSE file for details.