Introduction
MOMIA (or Mycobacteria Optimized Microscopy Image Analysis) is a python based image analysis toolkit optimized for dealing with mycobacterial cells. Given a single or a set of fluorescent microscopic image(s), OMEGA renders accurate object segmentation and graphical representation of fluroescent or morphological profiles at both the single cell level and the populational level. OMEGA was developed to analyze a M. smegmatis fluorsecent protein tagging library (Mycobacterial Systems Resource, Dendra, or MSR-Dendra) which accounts for over 1,000 highly conserved mycobacterial genes. You may find the MSR-Dendra dataset (along with many other amazing mycobacterial resources) on this website.
MOMIA is still under development, please use with caution.
Installation
To install MOMIA from the Python Package index (PyPi) , make sure you have pip installed, then run:
$ pip install momia
1 maintainer
Release files for MOMIA 0.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| MOMIA-0.0.1.tar.gz | 60.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| MOMIA-0.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 126.8 kB
Release files / MOMIA-0.0.1.tar.gz
| Download URL | MOMIA-0.0.1.tar.gz |
|---|---|
| Size | 60.2 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.7.4
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Release files / MOMIA-0.0.1-py3-none-any.whl
| Download URL | MOMIA-0.0.1-py3-none-any.whl |
|---|---|
| Size | 66.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
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| Uploaded via |
twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.7.4
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