MarsGT 0.2.1

MarsGT: A Python library for rare cell identification (Internal testing only)

Title：MarsGT:Multi-omics data analysis for rare population inference using single-cell graph transformer

Note: This project is for internal testing purposes only. Do not use it in a production environment.

MarsGT, for rare cell identification from matched scRNA-seq (snRNA-seq) and scATAC-seq (snATAC-seq),includes genes, enhancers, and cells in a heterogeneous graph to simultaneously identify major cell clusters and rare cell clusters based on eRegulon.

Installation

System Requirements

• Python 3.8.0 or higher

Installation Steps

• Install the required dependencies using pip:

pip install -r requirements.txt

• use pip to install MarsGT:

pip install MarsGT