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MetaChecka2000

Project description

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Overview
=========

MetaChecka is a metagenomic QA toolset. It uses sets of reference
genes to test for bin completeness and contamination

Installation
=========

Should be as simple as

pip install MetaChecka2000

Data preparation and running MetaChecka2000
=========

MetaChecka2000 expects to see a folder containing one or more multiple fasta
files containg assembled and binned contigs, one file for each bin.

You need to:

1. Extract genes from the contigs
2. Use hmmer to match these genes to an existing database
3. Do some counting

Use: metachecka2000 -h for more detailed help

Licence and referencing
=========

Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/MetaChecka2000

This software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.

Copyright © 2012 Michael Imelfort, Connor Skennerton. See LICENSE.txt for further details.

Project details


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This version
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0.1.3

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0.1.1

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0.1.0

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Filename, size & hash SHA256 hash help File type Python version Upload date
MetaChecka2000-0.1.3.tar.gz (22.4 kB) Copy SHA256 hash SHA256 Source None Dec 18, 2012

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