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Overview
=========
MetaChecka is a metagenomic QA toolset. It uses sets of reference
genes to test for bin completeness and contamination
Installation
=========
Should be as simple as
pip install MetaChecka2000
Data preparation and running MetaChecka2000
=========
MetaChecka2000 expects to see a folder containing one or more multiple fasta
files containg assembled and binned contigs, one file for each bin.
You need to:
1. Extract genes from the contigs
2. Use hmmer to match these genes to an existing database
3. Do some counting
Use: metachecka2000 -h for more detailed help
Licence and referencing
=========
Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/MetaChecka2000
This software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.
Copyright © 2012 Michael Imelfort, Connor Skennerton. See LICENSE.txt for further details.
1 maintainer
Metadata
1 maintainer
Release files for MetaChecka2000 0.1.3
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