A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with sequence bloom trees
Project description
MetaSBT
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
Please visit the official wiki to get started playing with MetaSBT.
Also note that we maintain a series of public databases built with our framework over a set of curated microbial genomes. They are all indexed in our MetaSBT-DBs repository.
Note Are you interested in using our software and databases, or you want to build your own private database, but you do not have enough computational resources? Get in touch with us, we are always happy to collaborate!
Credits
Please credit our work in your manuscript by citing:
Manuscript in preparation
Contributing
Long-term discussion and bug reports are maintained via GitHub Discussions and Issues, while code review is managed via GitHub Pull Requests.
Please, (i) be sure that there are no existing issues/PR concerning the same bug or improvement before opening a new issue/PR; (ii) write a clear and concise description of what the bug/PR is about; (iii) specifying the list of steps to reproduce the behavior in addition to versions and other technical details is highly recommended.
Support
If you need support, please open an Issue or a new Discussion. We will be happy to answer your questions and help you troubleshoot any kind of issue concerning our framework.
Copyright © 2022 Fabio Cumbo, Daniel Blankenberg. See LICENSE for additional details.
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