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A class for converting BSMAPz methratio output into a fast and compressed hdf5 format

Project description


This will parse output from

and make a sparse, compressed hdf5 representation for fast queries based on position. Indexing is 1-based and follows the same conventions as samtools's faidx.


Test the package

python test

then install it into the system package location

pip install .

or, your local path

pip install --user .


from Meth5py import Meth5py
m5 = Meth5py('tests/test_meth.txt', 'tests/test.fa')
for record in m5.fetch('Chr1',10,11):


Documentation can be found here

Project details

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